Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00280 ATGGCAAGACATTCGATCGTGTTTCTTGTGGTTCTTGTTGTTCTTATTTTTCCGTGGGATGTTTTATGTTATTCAGAGAAAGAAATAAAGAATTGGTGTAGCCAAACACCATATCCAGCTCCATGTGAAGAATTTCTCAAAACCAAAGCCTCAACAAAGAAAAGCACCCCAATAACCACAAAATCCCATTTCTTTGAAATCTTAGTCGAAACGGCACTAGAGCGTGCCGTTTCGGCCCATAAAAATGCTCTTTCTCTCGGCCCAAAATGCCGAAATTCCAAAGAAAAAACTGCATGGACCGATTGCGTTGACCTCTACGACGAAATCATAACCCGACTCAACCGGACCTCCGACCGCTGCACCCCAGCCGACGCTCAAACCTGGCTCAGCGCCGCTCTCACCGCCCTCGAAACCTGCCGGACCGGGTTCGACGAACTCGGGCTTTCGGCTTTCGGCTACCCATTGACGGCTAATAATGTTTCGAAGTTGATTAGTGATGGGTTGTCGGTGAATAAACCCGCGTCACCGGAGGGGTATGAGCCGACGACCATCATGGATGATGGGTTTCCGACGTGGGTTAGGCCCGGTGACAGGAAATTGCTGCAATCTGGGTCTCCGAAGGCGAACGTAGTGGTGGCGCAAGATGGGTCGGGGAATTTTAAGACGGTGAAGGAAGCTGTCGCCGCCGCAAAGGGCGGTGGGAGATTTGTGATATATGTAAAGTCGGGGGTTTATAATGAGAATTTGGATATTAAGGCTAAGAATGTTATGATGGTCGGCGACGGTATCGGAAAAACTATCATTACCGGCAGTAGAAGTGTCGGCGGAGGTTCCACCACGTTCAGATCCGCCACCGTTGCCGTTGATGGAGACGGATTCATCGCCAGAGACATAACTTTCAGAAACACCGCCGGAGCAAAGAACCACCAAGCGGTGGCGCTCCGATCAGGTTCAGATCTCTCAGTCTTCTACCGTTGCGGCTTCGAAGGGTATCAAGACACTCTCTACGTTTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAATGCCGCCGTCGTACTCCAAGATTGCAACATCATCGCCCGTGATCCTCCGAACAAAACCATCACCGTCACCGCCCAAGGCCGTTCCGATCCGAATCAGAACACTGGAATCTCCATCCACAATTGCCGAATCACATCCGCCGGCGGCCTCAGCGGCGTCAAGGCCTATTTAGGCCGCCCATGGAGGCAATATTCCCGGACGGTTGTTATGAAATCCTCGATCGGAGGATTCATAAGTCCGGCCGGGTGGATGCCGTGGAGCGGTAATTTTGCCCTAAACACGCTGTATTACGGTGAGTATATGAATACGGGGCCGGGAGCGTCGACGGCGAATCGGGTGAACTGGAAGGGTTATCGTGTGATTACCAGTGCGGCGGAGGCTTCGAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTGCCGAGTACGGGTGTGCCTTTCACTTCCGGTCTCTGA 1536 51.82 MARHSIVFLVVLVVLIFPWDVLCYSEKEIKNWCSQTPYPAPCEEFLKTKASTKKSTPITTKSHFFEILVETALERAVSAHKNALSLGPKCRNSKEKTAWTDCVDLYDEIITRLNRTSDRCTPADAQTWLSAALTALETCRTGFDELGLSAFGYPLTANNVSKLISDGLSVNKPASPEGYEPTTIMDDGFPTWVRPGDRKLLQSGSPKANVVVAQDGSGNFKTVKEAVAAAKGGGRFVIYVKSGVYNENLDIKAKNVMMVGDGIGKTIITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGAKNHQAVALRSGSDLSVFYRCGFEGYQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVLQDCNIIARDPPNKTITVTAQGRSDPNQNTGISIHNCRITSAGGLSGVKAYLGRPWRQYSRTVVMKSSIGGFISPAGWMPWSGNFALNTLYYGEYMNTGPGASTANRVNWKGYRVITSAAEASKFTVGNFIAGGSWLPSTGVPFTSGL 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1704765 1709607 + MELO3C006208.2.1 Cme06g00280 329429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00280 511 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 172 IPR035513 -
Cme06g00280 511 PANTHER PECTINESTERASE 7 510 - -
Cme06g00280 511 CDD PMEI-like_3 32 175 - -
Cme06g00280 511 TIGRFAM PME_inhib: pectinesterase inhibitor domain 2 148 IPR006501 GO:0004857
Cme06g00280 511 Pfam Plant invertase/pectin methylesterase inhibitor 28 166 IPR006501 GO:0004857
Cme06g00280 511 Gene3D - 204 511 IPR012334 -
Cme06g00280 511 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Cme06g00280 511 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 171 IPR035513 -
Cme06g00280 511 PANTHER PECTINESTERASE 7 510 - -
Cme06g00280 511 SMART PMEI_2 24 170 IPR006501 GO:0004857
Cme06g00280 511 Pfam Pectinesterase 209 496 IPR000070 GO:0030599|GO:0042545
Cme06g00280 511 SUPERFAMILY Pectin lyase-like 206 510 IPR011050 -
Cme06g00280 511 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00280 Cme-Chr6:1704765 Cme09g01544 Cme-Chr9:20495373 0 dispersed
Cme06g00279 Cme-Chr6:1690079 Cme06g00280 Cme-Chr6:1704765 3.42E-125 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00280 K01051 - csv:101217552 950.658