Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00374 GTTTTTTTGTTTTGCTTAGTGGCGCTAATCCCTACCAAAACCCTCGGAGATCCGTTCACCATAGGCACAGTAAAGCACCGGAAGGAGGTCGAGAAAAGCACGGCCATGGCGAAAGCCGACAACATCCTCCAAACTCTCGGCGACTTCACCAGCAAAGAGAATTGGGACAATTTCTTCACCATACGCGGCCATGGCGATGCTTTTGAGTGGTATGCCGAGTGGCCTGAGCTCAAAGACCCACTCATTTCCCACCTTACTACCCTCTCCAAATCCCCTTCTCCCCAGATTCTCGTTCCTGGTTGCGGAAACTCCAGCCTCTCCGAGCAGCTTTACGACGCCGGCTTTGGATGTATCACCAACATTGATTTCTCTAAAGTTGCAATCTCTGATATGCTCCGCCGCAACGTGAGGGAACGCCCTGATATGCGGTGGCGCGTCATGGATATGACGAACATGCAGTTCACGAACGACACATTTGATGCTGTCGTTGATAAAGGTGGATTGGATGCTTTAATGGAACCAGAAGTTGGTTCTAAGCTAGGAAGTCAATACTTATCCGAGGTGAAAAGAGTTCTAAAACCGGGAGGGAAATTTATCTGTCTCACCTTAGCAGAATCTCATGTTCTAGGCTTGCTTTTTCCCAAATTTCGTTTTGGATGGAAAATGAGTATTCATGTCATACCTCCAAAACCACCATGTAAGCCTAATTTTCGAACATTTATGGTGGTGGTGGAGAAAGATGAATCTACTACATGGCACCAGATAGAATCTTCTTTAAATCTTTCTTCAATTGATTCCCGTGGAGACCAGACTCGTGAACTTGTCCAAAGTCTTGAGAACGAGAATAGAATTCGTGAAAAGTATTCTAGTGGTGCTGATTTGTTGTTCTCTCTAGAAGACCTGCAACTTGGAGCAAAGGGAGATCTGCAGAAGCTTCACCGAGGCCGTCGGGTCCAATTTACTTTAGGTGGACAAGGGACTTCTATTTTCAGTTACAGAGCTGTACTTCTTGATGCTCGGGAGCATTCTGGCCCATTCTCGTATGAATGTGGAGTTTTTATAGTGCCCAAGACTCGTGCTCATGAATGGCTGTTCTCTTCAGAAGAAGGCCAGTGGATGGTTGTCGAAAGCTCAAAAGCTGCTCGCCTTATAATGGTTCTATTAGATGAAACGCAATCTGGTGCCAACATGGATGCTATTCAGAAAGATTTGTCTCCCCTAGTCAAACAATTGGCACCTGGAGAAGATGACAGTGGATCTCAAATTCCATTTATGATGGCTAGCGATGGAATCAAGGAACGGAATTGTGTTTTTCAGGGTACATCTTCATTAACTGGTTCAATTGTAGTTGAAGATGTAAAATATGAACATGTTAGTGGCGATGCCAGTCGCATCTTCCCATCTGGAGATTTGATATTCCGCCGTCTTGTTTTCCAAAGAACGGAGAGTTTGGTGCAGTCTGAAGCTTTGTTGACAAGGGAGAGAGTTGATGACAAAGTTTCTGGTCAGATGGACAGGAAAAAGTCTCATGCATCATCCAAATCAAAAAATAAAGGAAAGAAGAAACTGAATAAGGAGTCTAGTGACCAAATGAAGGTTTATCATGGCTACCTGGCAAGTTCTTATCATTCGGGGATCATTTCTGGGTTTATGTTGATATCTCAATATTTGGGGAGTGTGGCATCAGCTGGAACAATGGTGAATGCAGTTATCATTGGTCTTGGAGCAGGTTTGCTGCCCATGTTTCTCCGTGCATGCATGTCTTTTTTACACATTGAGGTGGTTGAATTGGATTCAATGATCCTCAATCTTGCACGGGATTACTTTGATTTTACCGAGAATGCAAATTTGAAGGTTCATATTGCTGATGGGATTCAGTTTGTTAGAGAATTCAGAAACTATGGGACAAATGATTCAACGGTAGCTCTTGATAGTGGAAACTCTTCTCAAGTAGAACAAGGAAACAAGAAAATCGACATACTTATCATAGATGTGGATGCAACAGACTCTAGCTCTGGAATGACCTGCCCAGCGGCTGATTTTGTAGAAGAGCCATTTCTACTGGCAGTGAAAGATGCCCTCTCCGAGCAGGGTCTTTTTATTATAAACTTGGTCACACGATCTCCAACCATCAACGATATGGTGGTCACGAGGATGAAAGGAGTCTTCAATCACCTCTTTTCCCTTCAACTTGAGGAGGATGTGAATGAAGTGCTATTTGCTCTTCCTTCAGATTTAGGCATAAAGGAGGATCATCTCTTCAATGAAGCATCTCTTCAACTTGAGAAACTTTTAAATTTGAAACACCTAGAAATGAGGCAGAGCATAGTTGATGCTACAAAGGAGATCAGATGTTTGAAGTAG 2364 43.49 VFLFCLVALIPTKTLGDPFTIGTVKHRKEVEKSTAMAKADNILQTLGDFTSKENWDNFFTIRGHGDAFEWYAEWPELKDPLISHLTTLSKSPSPQILVPGCGNSSLSEQLYDAGFGCITNIDFSKVAISDMLRRNVRERPDMRWRVMDMTNMQFTNDTFDAVVDKGGLDALMEPEVGSKLGSQYLSEVKRVLKPGGKFICLTLAESHVLGLLFPKFRFGWKMSIHVIPPKPPCKPNFRTFMVVVEKDESTTWHQIESSLNLSSIDSRGDQTRELVQSLENENRIREKYSSGADLLFSLEDLQLGAKGDLQKLHRGRRVQFTLGGQGTSIFSYRAVLLDAREHSGPFSYECGVFIVPKTRAHEWLFSSEEGQWMVVESSKAARLIMVLLDETQSGANMDAIQKDLSPLVKQLAPGEDDSGSQIPFMMASDGIKERNCVFQGTSSLTGSIVVEDVKYEHVSGDASRIFPSGDLIFRRLVFQRTESLVQSEALLTRERVDDKVSGQMDRKKSHASSKSKNKGKKKLNKESSDQMKVYHGYLASSYHSGIISGFMLISQYLGSVASAGTMVNAVIIGLGAGLLPMFLRACMSFLHIEVVELDSMILNLARDYFDFTENANLKVHIADGIQFVREFRNYGTNDSTVALDSGNSSQVEQGNKKIDILIIDVDATDSSSGMTCPAADFVEEPFLLAVKDALSEQGLFIINLVTRSPTINDMVVTRMKGVFNHLFSLQLEEDVNEVLFALPSDLGIKEDHLFNEASLQLEKLLNLKHLEMRQSIVDATKEIRCLK 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2323226 2332307 - MELO3C006304.2.1 Cme06g00374 329523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00374 787 CDD AdoMet_MTases 96 200 - -
Cme06g00374 787 Pfam Spermine/spermidine synthase domain 583 732 - -
Cme06g00374 787 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 50 207 IPR029063 -
Cme06g00374 787 PANTHER EEF1A LYSINE AND N-TERMINAL METHYLTRANSFERASE 47 745 - -
Cme06g00374 787 MobiDBLite consensus disorder prediction 497 526 - -
Cme06g00374 787 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 47 745 - -
Cme06g00374 787 Gene3D Vaccinia Virus protein VP39 47 263 IPR029063 -
Cme06g00374 787 Pfam Methyltransferase domain 98 200 IPR013216 GO:0008168
Cme06g00374 787 Gene3D Vaccinia Virus protein VP39 519 782 IPR029063 -
Cme06g00374 787 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 568 745 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00374 K25166 EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferase [EC:2.1.1.-] - csv:101211869 1415.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00374 Cme-Chr6:2323226 Cme06g02511 Cme-Chr6:32165878 8.70E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g949 . Blo12g00108 . . . . Bma04g01167 . . . . . Car06g01061 . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00374 . . . . . . . . . Cmo06g01245 . . . . . . . . . . . . . . . . . . . . . . . Chy06g00355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010449 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00374 Cme_Chr06 FPKM 58.764343 70.117783 24.504356 25.393795 20.144333 19.725138 18.564739 21.58683 20.051514 18.314798