Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00378 ATGAGAAGATCCGGGCACCATTTACATCGGTCCCACGTGAAGCAAGGTGCCGGAGGATTGAAGAGCATGATGGGGAGATTATCAATCGCTGTGGTTGTACTCTTGATCTGCACAATTTCATTGTTCGTTTCATCGACGAGCAAAGGTGGCTTTGGGTCCGTCTCCCGATCTGAGATCAAGGCTGAAGAACTTTGGAGCCGTGCTGATTCTGGTGGTTGGAGACCTTCCTCAGCTCCGCGATCAGATTGGCCACCTCCCCCGAATGAGAGCAACGGTTACCTGAAGGTTCGCTGCAATGGTGGTCTGAATCAACAACGCAGCGCTATCTGTAATGCTGTTCTTGCTGCTCGGATTATGAATGCAACACTGGTTCTACCCGAGTTAGATGCAAACTCCTTTTGGCGTGAGAAGAGTGGTTTTCATGGTATCTATGATGTTGAAAATTTTATAAGGACCCTGAGATATGATGTACGAATCGTGGAAAGCATTCCAGATATACGCAAGAATGGGAAAACTAAGAAGATAAAACCTTTTCAGCTCCGACCCCCTAGAGATGCTCCAATCAGTTGGTATACTTCAGTTGCTCTTGAGAAGATGAGGGAGCATGGTGCTATACATCTCACTCCATTCTCACATCGTTTAGCCGAAGAAATTGACAATCCCGAGTACCAAAGATTGAGATGCAGGGTTAACTATCACGCTCTGAGATTTAAGCCACATATTTTAAGAATTAGTCAATCAATAGTTGATAAGCTCCGCAATCAAGGCCATTTTATGTCTATTCACCTTCGTTTTGAGATGGATATGCTGGCCTTTGCAGGGTGTTTTGATATTTTTACTCCTGAAGAGCAAAAGATTTTGAAGAAATACCGAGAGGAAAATTTTGCAAAGAAGAGACTGGTTTATAGTGAAAGAAGGGCAATTGGAAAATGTCCCTTAACTCCAGAGGAGGTTGGTCTCATTTTACGTTCCATGGGTTTTGACAATTCTACCAGAATATATCTGGCGGCTGGTGATCTCTTTGGTGGCGAACGATTCATGAAGCCATTTCGTGCTTTGTTTCCCCGTCTTGAGAACCATAGCTCTGTTGAATCTTCAGAGGAACTTGTTGAAAATGTGAGAGGAGTGACAGGTTCTGCAGTTGACTACATGGTTTGTCTCCTTTCTGACATCTTCATGCCAACCTATGATGGACCAAGCAACTTTGCGAACAATTTGCTGGGGCACCGTCTTTATTATGGCTTCCGAACTACAATCAGACCAGACAGGAAAGCTCTTGCACCAATTTTCATTGACAGAGAGAACGGAAGAACAGCAGGCTTTGAAGAAGCTATTAGGAGAGTGATGCTTGGCACGCACTTTGGCGGGCCACATGATCGCGTCTCACCAGAGTCATTCTATACAAATTCTTGGCCTGAATGTTTCTGCCAAATGTCACCAAAAAATCCTGCTGATAAATGTCCACCAGATAACGTGTTGGAGATTTTGAACGGCCAATTGGTGGAAAGTCAAAGTGAGAATGATTTGGATGTCTCAACCCAATCAAATTCAACTACCACAGTACGAAGATGA 1572 44.15 MRRSGHHLHRSHVKQGAGGLKSMMGRLSIAVVVLLICTISLFVSSTSKGGFGSVSRSEIKAEELWSRADSGGWRPSSAPRSDWPPPPNESNGYLKVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWREKSGFHGIYDVENFIRTLRYDVRIVESIPDIRKNGKTKKIKPFQLRPPRDAPISWYTSVALEKMREHGAIHLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHILRISQSIVDKLRNQGHFMSIHLRFEMDMLAFAGCFDIFTPEEQKILKKYREENFAKKRLVYSERRAIGKCPLTPEEVGLILRSMGFDNSTRIYLAAGDLFGGERFMKPFRALFPRLENHSSVESSEELVENVRGVTGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIDRENGRTAGFEEAIRRVMLGTHFGGPHDRVSPESFYTNSWPECFCQMSPKNPADKCPPDNVLEILNGQLVESQSENDLDVSTQSNSTTTVRR 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2367962 2372868 + MELO3C006309.2.1 Cme06g00378 329527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00378 523 PIRSF UCP009360 5 480 IPR024709 -
Cme06g00378 523 Pfam GDP-fucose protein O-fucosyltransferase 93 413 IPR019378 -
Cme06g00378 523 MobiDBLite consensus disorder prediction 69 88 - -
Cme06g00378 523 MobiDBLite consensus disorder prediction 504 523 - -
Cme06g00378 523 CDD O-FucT_plant 93 418 IPR024709 -
Cme06g00378 523 PANTHER OS02G0726500 PROTEIN-RELATED 15 507 - -
Cme06g00378 523 PANTHER O-FUCOSYLTRANSFERASE 1 15 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00378 - - - csv:101213004 1049.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00378 Cme-Chr6:2367962 Cme10g00388 Cme-Chr10:2495917 5.23E-88 dispersed
Cme07g01047 Cme-Chr7:12617765 Cme06g00378 Cme-Chr6:2367962 3.94E-07 dispersed
Cme06g00378 Cme-Chr6:2367962 Cme02g01801 Cme-Chr2:24792080 1.16E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g998 . . . . . . . . . . . Cma14g01898 Car06g01064 Car14g01699 . Cpe08g00401 Cpe03g01597 Bhi01g00223 . . . . . . . . . . . . . . . . . Lsi05g01846 . . Cme06g00378 . . Bda11g00345 . . Bpe13g00861 . Bma06g01279 . Cmo06g01249 Cmo14g01951 . . . . . . . . . . . . . Cla05g00345 Cam05g0375 Cec05g0379 Cco05g0380 Clacu05g0369 Cmu05g0354 Cre05g0418 . Csa03g01090 Chy06g00360 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003688 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 3 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00378 Cme_Chr06 FPKM 18.184124 14.648916 10.377833 10.542377 7.991827 8.369722 6.896545 12.999624 13.677922 12.259798