Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00379 ATGGCTTGTGAAGCTATAAAACTGTGGACTTTTAATGGATTAGTAGCTGCATTTCTTGATCTTGGTATAGCTTTTTTATTATTATGTGCATCAAGTCTTGTTTTCTTTACATCCAAATTTCTGGCATTGTTTGGATTATGTCTGCCTTGCCCTTGTGATGGGCTATTTGGGAACCTTAGTAGGGATCACTGCTTTCAAAAGTTACTCGTGGATCATTCGTCTAGAAAAATATCTTCAGTCGTGCATTCTACTAGAGAAAAGTTCCCATTAGATTCCTTGTTGGATGAACCAAAATGTTGTTTTAAGTCAATGTTGGTTCACGAGAGGAGTGTCAAGGAGGCTCGAGTTAAATTGGAAGGTGAAGCTTCAGGTAGTTCCTCTTTAAAAATCAGATCACCACAAGATATGATTTATGGAGACTATCCCAGTGTCAATGAATTGCATTGTCGAGATGGTGGGGATTGCAGGAAGGTCATATCAGCATCTCCGAATGTCATTTTGCAGTCGGATGTGGAACTTGAAGACCTTTCTCGTTCTCCTTCAAGCTTCAGTGGATTTGGGGATGACAATACCGAGGATGATGGATTTTTTTCTGTTGATTCTGGAGATGAAAGGGAGGCTTCATCAGACAACAGCGATCAATATAAAGTATTTCCACATCTTGAACTAGATGATTCTTGTGATGAGAAAATATGTGCAGAGATGTGCGAAGCATCTGTTGAAGAGGCTGGGAACAGCTGCAGAAGGCAGTTATGCTTGGATGGTAATGAGAGTGATACAATCAAACAATTGGAACAAGCACTTGAAGAAGAGCAGTCGGTTCGCGCTACCTTGTACGTGGAGCTTGAGAAAGAGAGAAGTGCTGCTGCCACCGCTGCTGATGAGGCCATGGCTATGATATTACGTCTTCAGGAGGAGAAGGCATCTATAGAAATGGATGCTAGGCAATATCAGAGGATGATAGAGGAGAAGACTGCTTATGATGCTGAAGAAATGAGTATTCTTAAAGAAATTCTAGTGAGGAGGGAGCGAGAAATGCATTTCCTAGAGAAGGAAGTCGAAGCTTTACGGACAAGTTTCTTTGAGTATGACGGAGTAGGTGTTGATATGCTTGACTCGGAAGTTACACCCCCAAGGGCCCCTTCTTTCACCTATCCAACTGAAGATCCATGTACTAATATATCTAACGAAAAACATTCTTTGCAACATGAGATACCCTCAGTGGAGTCGCAAAAATTAACTTTTGAGTTTGAGGAAGAGTCGCCATCTATTCGAGCGGATGAAATTGCGGATGCTGCAAAAGCTAGGAGGCTGTTGTTGCTCCAAGTTCCTGATAACTTCAAGGGCAGTGAAGAGATTGACTATGAGTTACAAGGTAAGGGCATGATAGAGGATGAGAATTTGTACATTGTACCAGGAAAAGTAACTGAATTGGTGCCATATTTGCAAAGCAACGAGTCAAATGGTCTAGGTAAGGTGGATAAATGCACGGAATTGATTGCAGATGAACAAGAAAAAGTCGACAAAGTGTCATATGATGGGTTGGCTTTGGCGAAAACAATTCTTCCTTGTCATGAAAAGAATGGTGACCATCAACGAACAAGAGATCTCTACTCTGTGAACAATACAGATCCTCATCCTCATGATATTCATGTTGTTGAAGATGAAGCTAAAACATCAAATGAAGCAGTTGATAATGGAAGTGAAGAACCTTTGGTCAATGGTACCTCAAATATTCCAGTTAAATGTGACAGTCCATCCTTCAGTTTGTTGCAGAGTGAACTAGACATCACGAGAAGCAGCTCAGATGCCACTGGAAGATTTCCACCAATTGCTCGTTCTCGAAGTCACTCCATGCAATCACAATTGCGTAGAAATTCGATGTCTGCTGTCGATTATGAAAGGTCAAAAATTGGCAATGAAGTTGAGTGGCTCAGAGGAAGGCTAAAGATTGTTCAAGAGGGAAGAGAAAAACTCAAGTTCTCTGTGGAGCACAAAGAGAAGGAAAGCAATCAGTTTCAACTTTTAGAAAACATAACAAATCACCTTCGCGAAATCCGACAACTAACGGACCCTGGAAAGGCATCTCTCCATGCTCCACTGCCTCCATCCTCAAAGGGAACCATGGGGAAGAAAGTTAAGAAGAAGACGAACCGAGCTCCTCCAAAAGAGAAGCGGGTATCTTCAAATTCACCGAGGAAGGTGCCCCAACCAAGCAACACAACGGTGGAGACTGCTGATGAGGAGGTTTCAATTGTGAAGGAGAAAAGCCAATGCCGTCATCTTGATAAATGCTTTAATTTAAATGAGTTATCATCTAAACTTGGGTCCGCGGAACCTATTAGCTGTGAAGATTGTCAAGATAGTTCAGCTGATAGAAGGGGGAGTAGGGGGAAGGCTAGACATGGGAAGAAAAAAGGGGGAACTTCTGTGGATGTAAAAACTGATGCCAAAGCAATTTGGATTTGTTTGCAATGTGGGCATTATGCCTGTGGAGGTATTGGACTTCCTACAAACTCTCAGAGTCATGCCGTTCGACATGTCAGGCAAACTCGTCACCCTGTGGTGATTCAGTTTGAAAACCCGCAGCTTCGATGGTGTTTCTCTTGCAATACTTTACTTCCAGTAGAGAAAACTGAAGAGAATGGTGAACAAAAGGATGGCTTGTCTAATGTGGTGAAATTAATTAGAGACCGATCGATGGAATCCACGCCTGTGGATGTTGAGAACACGCGTTACGCTAGTAATGAAGTTACAGCCGCAACTAAATCAGAAAGTTCAGTATTGATTGATTTGGATAGAAGAAATCAATATGTTGTAAAAGGATTGATTAATCTTGGTAACACTTGTTTTTTCAATTCAATCCTTCAAAATCTCTTGGCCATTGATATGTTGAGAGATCATTTTGTGAAATTGGAAGAATGTATTGGACCTCTAACGATAGCTTTGAAGAAGATCTTTATAGAAGCAAGAACGGAAAGCAGAATGAAAGGCTCAATAAATCCGAGATCAGTTTTTGGCTGCATCTCTTCCAAAGCTCCTCAGTTCAAAGGATATGAACAACATGACAGTCATGAATTGCTTCGTGTTCTACTTGATGCATTGTCTTCTGAAGAGCTGACTTCAAGGAAGATGACAAATTCTAAGGAAGAGAGAATATCTGGAAACCTCACTCCTACTTTTGTTGACGAGATGTTTGGAGGGCAAATATCAAGTGCCGTTTGTTGCAAAGAATGTGGCCATACATCAACGGTTTACGAACCATTTCTAGATCTCTCTCTTCCCGTTCCAATGAAGAAGCCTCTGGCCAAAAAGGTCCAACCAGTGTCTCGAGCTAAGAAGACAAAAGTGCCACCCAAGAGAAATGGAAAGACGATTCCTAAAACTAACAAGGTTTCCGATATTGTACCAGTTCAAATTGCGTCAGTTCCATCATCTAGTAACGAGTCTTCCCTTCCATCAGAGGCCTGTGCCAGTAGCACAACTACCATTATGGAGAAGACTTCAACTTCTCAAAATGTCTCTGATGCTAAAAAGTCTGAAAAAGAAATTTCGGTTGAGAATGGAGGAGAATGTGCTTCAGATAATTTGACTTGGCTGGATTTTCTTGAACCAGAACTGAATGCCGACAATTGTGATATTTCCACTGCTCGGGATTCTGAAAATAATGTTGAAGTATTTATTAGTGACGATTCACAACAAAGCGTTTCTGGGTTGAGTATGCCAGTTTCATCCATTCACAATGAGCCCAATCAACGACCAGATTTTTCTTCAGTAAATTCGTGGGATGATGAAGCTCCTTTACAGGTGCAAGCCTCTGAAGTTTTGTTGCTTCCTTACAAGGAAGAGAGTTCCTCTGCTGAAGTAGTAAAAGAAGATGATCAGGCTTCCTCATCAATTTTGGGCTGTGCTCAAGAAGATTTTGATGGATTTGGCCTTGGTGATATGTTTGATGAGCCTGAAATTCCTATAGGGCCCATTGGGAGGCCCTCCACTTCAAATGAAGTTGCAGAAAGTAGTTTTAATAGTGAGTCTGATCCTGAGGAAGTCGATAACACCGATGCTCCCGTCTCTGTGGAGAGTTGTCTCACTTTTTTCACAAAGCCGGAACTTCTGTCCAACGAGAATGGATATAACTGTGAGAAATGCTCAAAAAGACTACAACAACAGAGGTTGGAAATGAAGAAGCAATCAAAGGTTGCTTGCAAAGCTGTAGCAAATGGATGCCAAACTGCAGTAGGGGGTGATATATCTAGTTGCAACGAGAACTCTTCAGTTGAAGTAAAAAATCAAAGAAATACGAATTTAACAAATGGTTCTATAATTTATAATAGTGGTGAAAGCTCCAATTTGAAAAAGAATGCAGATTGTTCCAGTCAAGATTGCACAAAACCTGTCAATTGCCAGATAGGCAAGACAGATCCCCTCGTTTTGGATGAGGATGAAGCGAAGGTTGACAAAGATATGAATCCTGGCCTATCATGTTCTTCGGGTTGTAGTAACACCTGCAATCAAGAGAATTCAGATGATAAATCCAGTTCTCTTCCCAACGATGAACATGCTAAAACTAAAATTGAGCACTTGAGTTCACATCTATCTGTCGGGAACCAATCAGAAGAAAGTGAAGATGGTGAGATGGATTCTGATCCAACAGTTGTGAATGTGAAGAGAGATGCAACAAAGAGGTTTCTCATACACAAAGCCCCTCCTATCTTGACAATTCATATGAAGAGGTTCACTCCTGATGCTCGGGGTCGTTATAGTAAATTGAATGGCCACGTCAGATTCAAGGAAACAATTGATCTTAAACCATACGTGGATACAAGGTGTGCTGATAGGGACAAGTGTAATTATCGGTTGGTCGGGGTCGTGGAGCACTCTGGATCTATGAGAGGGGGCCATTATGTTGCATATGTGAGAGGGGGCAACAGAAAGAGGAGTAGTGGGGAAGCTGAGGAAGATGCTTCTGTTTGGTATTATGCAAGCGATGCCGTCGTAAATGAGGTTACCCTGGATCGGGTTCTTGGTTGCGAGGCATACATCCTATTTTATGAGATAACATGA 5064 41.59 MACEAIKLWTFNGLVAAFLDLGIAFLLLCASSLVFFTSKFLALFGLCLPCPCDGLFGNLSRDHCFQKLLVDHSSRKISSVVHSTREKFPLDSLLDEPKCCFKSMLVHERSVKEARVKLEGEASGSSSLKIRSPQDMIYGDYPSVNELHCRDGGDCRKVISASPNVILQSDVELEDLSRSPSSFSGFGDDNTEDDGFFSVDSGDEREASSDNSDQYKVFPHLELDDSCDEKICAEMCEASVEEAGNSCRRQLCLDGNESDTIKQLEQALEEEQSVRATLYVELEKERSAAATAADEAMAMILRLQEEKASIEMDARQYQRMIEEKTAYDAEEMSILKEILVRREREMHFLEKEVEALRTSFFEYDGVGVDMLDSEVTPPRAPSFTYPTEDPCTNISNEKHSLQHEIPSVESQKLTFEFEEESPSIRADEIADAAKARRLLLLQVPDNFKGSEEIDYELQGKGMIEDENLYIVPGKVTELVPYLQSNESNGLGKVDKCTELIADEQEKVDKVSYDGLALAKTILPCHEKNGDHQRTRDLYSVNNTDPHPHDIHVVEDEAKTSNEAVDNGSEEPLVNGTSNIPVKCDSPSFSLLQSELDITRSSSDATGRFPPIARSRSHSMQSQLRRNSMSAVDYERSKIGNEVEWLRGRLKIVQEGREKLKFSVEHKEKESNQFQLLENITNHLREIRQLTDPGKASLHAPLPPSSKGTMGKKVKKKTNRAPPKEKRVSSNSPRKVPQPSNTTVETADEEVSIVKEKSQCRHLDKCFNLNELSSKLGSAEPISCEDCQDSSADRRGSRGKARHGKKKGGTSVDVKTDAKAIWICLQCGHYACGGIGLPTNSQSHAVRHVRQTRHPVVIQFENPQLRWCFSCNTLLPVEKTEENGEQKDGLSNVVKLIRDRSMESTPVDVENTRYASNEVTAATKSESSVLIDLDRRNQYVVKGLINLGNTCFFNSILQNLLAIDMLRDHFVKLEECIGPLTIALKKIFIEARTESRMKGSINPRSVFGCISSKAPQFKGYEQHDSHELLRVLLDALSSEELTSRKMTNSKEERISGNLTPTFVDEMFGGQISSAVCCKECGHTSTVYEPFLDLSLPVPMKKPLAKKVQPVSRAKKTKVPPKRNGKTIPKTNKVSDIVPVQIASVPSSSNESSLPSEACASSTTTIMEKTSTSQNVSDAKKSEKEISVENGGECASDNLTWLDFLEPELNADNCDISTARDSENNVEVFISDDSQQSVSGLSMPVSSIHNEPNQRPDFSSVNSWDDEAPLQVQASEVLLLPYKEESSSAEVVKEDDQASSSILGCAQEDFDGFGLGDMFDEPEIPIGPIGRPSTSNEVAESSFNSESDPEEVDNTDAPVSVESCLTFFTKPELLSNENGYNCEKCSKRLQQQRLEMKKQSKVACKAVANGCQTAVGGDISSCNENSSVEVKNQRNTNLTNGSIIYNSGESSNLKKNADCSSQDCTKPVNCQIGKTDPLVLDEDEAKVDKDMNPGLSCSSGCSNTCNQENSDDKSSSLPNDEHAKTKIEHLSSHLSVGNQSEESEDGEMDSDPTVVNVKRDATKRFLIHKAPPILTIHMKRFTPDARGRYSKLNGHVRFKETIDLKPYVDTRCADRDKCNYRLVGVVEHSGSMRGGHYVAYVRGGNRKRSSGEAEEDASVWYYASDAVVNEVTLDRVLGCEAYILFYEIT 1687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2373935 2385186 - MELO3C006310.2.1 Cme06g00379 329528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00379 1687 Gene3D Cysteine proteinases 1421 1687 - -
Cme06g00379 1687 MobiDBLite consensus disorder prediction 731 747 - -
Cme06g00379 1687 MobiDBLite consensus disorder prediction 1325 1354 - -
Cme06g00379 1687 MobiDBLite consensus disorder prediction 198 214 - -
Cme06g00379 1687 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 1618 1635 IPR018200 GO:0004843|GO:0006511
Cme06g00379 1687 MobiDBLite consensus disorder prediction 177 214 - -
Cme06g00379 1687 Pfam Zn-finger in ubiquitin-hydrolases and other protein 783 873 IPR001607 GO:0008270
Cme06g00379 1687 ProSiteProfiles Zinc finger UBP-type profile. 757 894 IPR001607 GO:0008270
Cme06g00379 1687 MobiDBLite consensus disorder prediction 692 750 - -
Cme06g00379 1687 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 711 1685 - -
Cme06g00379 1687 ProSiteProfiles GTD-binding domain profile. 259 357 IPR007656 -
Cme06g00379 1687 Gene3D Cysteine proteinases 923 1142 - -
Cme06g00379 1687 Gene3D Cysteine proteinases 1314 1404 - -
Cme06g00379 1687 MobiDBLite consensus disorder prediction 614 628 - -
Cme06g00379 1687 Pfam Zein-binding 263 353 IPR007656 -
Cme06g00379 1687 SMART Zf_UBP_1 811 864 IPR001607 GO:0008270
Cme06g00379 1687 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 941 1687 IPR028889 -
Cme06g00379 1687 MobiDBLite consensus disorder prediction 1527 1550 - -
Cme06g00379 1687 Coils Coil 339 359 - -
Cme06g00379 1687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 754 894 IPR013083 -
Cme06g00379 1687 Coils Coil 293 320 - -
Cme06g00379 1687 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 711 1685 - -
Cme06g00379 1687 MobiDBLite consensus disorder prediction 600 628 - -
Cme06g00379 1687 SUPERFAMILY Cysteine proteinases 940 1685 IPR038765 -
Cme06g00379 1687 SUPERFAMILY RING/U-box 758 875 - -
Cme06g00379 1687 MobiDBLite consensus disorder prediction 1106 1121 - -
Cme06g00379 1687 Pfam Ubiquitin carboxyl-terminal hydrolase 942 1684 IPR001394 GO:0004843|GO:0016579
Cme06g00379 1687 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 942 957 IPR018200 GO:0004843|GO:0006511
Cme06g00379 1687 Coils Coil 261 281 - -
Cme06g00379 1687 MobiDBLite consensus disorder prediction 1104 1128 - -
Cme06g00379 1687 MobiDBLite consensus disorder prediction 780 810 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00379 K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] - csv:101204267 1814.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01762 Cme-Chr1:24733289 Cme06g00379 Cme-Chr6:2373935 2.07E-52 dispersed
Cme06g00379 Cme-Chr6:2373935 Cme09g01372 Cme-Chr9:18962244 3.14E-18 dispersed
Cme11g00197 Cme-Chr11:2353927 Cme06g00379 Cme-Chr6:2373935 9.55E-09 dispersed
Cme12g01733 Cme-Chr12:24066525 Cme06g00379 Cme-Chr6:2373935 6.91E-12 dispersed
Cme06g00379 Cme-Chr6:2373935 Cme04g02307 Cme-Chr4:30019193 4.44E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g900 . . . . . . . . . . . Cma14g01896 . Car14g01698 Sed02g1501 Cpe08g00399 Cpe03g01595 Bhi01g00229 Tan10g0517 Cmetu06g0717 . Hepe05g1763 . Lcy11g1777 . . . . . . . . . . . Lsi05g01844 . . Cme06g00379 . . . . . . . Bma06g01282 . Cmo06g01251 Cmo14g01948 . . . . . . . . . . . . . . . . . . . . . Csa03g01093 Chy06g00362 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00379 Cme_Chr06 FPKM 0.429741 0.538027 0.327128 0.281399 1.081977 0.978047 0.887278 0.746125 0.60832 0.578542