Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00381 ATGCTCTCTGGGTTTTCACAGGAACCGGCCGGAATGTACTCCGCCATTCCGGCGCTGCCGATGGACGGCGGCGGGGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGTGATGCTTGTTTAGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCATGAACGATTCGTTGACGCCGTCACTCAGCTCGGCGGCCCAGACATGAGATCCACTTATCTATTAAATGCTGTAGAACTAGACCGCCTCATCAGATTAGACTCCTTCAAAAACGTCTCAAATTGCAACTTTGATTTGGCATTCGAACAAGCAACTCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTACAGATATTTACACCATATGTTTTCTTGATGCCTTGTGCTGGCAGAAATATCGGCTCGGGAAACAATCGTTCAAGGAATCAACTGAGAACTCTAAGGATGGTACAAACTTCCCCATCTAAACAGTTAGGACTTGGCAGTTTCTTTCCTTATTTTGCTTGCTTTCCTGCATTTGTTGGAATGAAATATCAAATAGTTCAAACTATGAGGCATGTTTACCTTTTTATTGAGATAATCACATGTCAACTAGCTGGAAACACGGGCTGTGGTTTGTTGTTGTATATCATTTGTGTGCTGTTTGATATTACGAATGCTTCTTGGAGGATTTCAGCTTCTTGCATTGCAGAGAGTCAAGAAACAAGTTCCTCGTCGTCACCGTCGTCGAGAATAATGGCACAGGATCTGAATGATGGTTTCCAGGTTACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGACATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAACGGGCTTGTCAAGCGTTGAGTGATCAGGCTGCAGCATCTGCAGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGATTCAAAAGAGATGGCACCATTGGAGACTCAGAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTTTAGAAAATCGAAAGGCTCCTACCGTTATGCCACGAATAGGCGATTGCTCCATGGATAGCTGCCTGACATCAGCTGGTAGCCCGGTTTCCCCAATCGGAGTAGGATCAACTGCCACCGCAATGAAGAGACCAAGACCGGTCTTCAGTCATGGAGATTCAATGGCTCTCGAGGGCAATGCCCGGCATGACGTCGAATGGATGATGAGTAATATTGGATGA 1320 46.74 MLSGFSQEPAGMYSAIPALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDMRSTYLLNAVELDRLIRLDSFKNVSNCNFDLAFEQATPKTIMRTMGVKGLTLYHLKSHLQIFTPYVFLMPCAGRNIGSGNNRSRNQLRTLRMVQTSPSKQLGLGSFFPYFACFPAFVGMKYQIVQTMRHVYLFIEIITCQLAGNTGCGLLLYIICVLFDITNASWRISASCIAESQETSSSSSPSSRIMAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPVFSHGDSMALEGNARHDVEWMMSNIG 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2389842 2394238 - MELO3C006313.2.1 Cme06g00381 329530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00381 439 PANTHER PROTEIN PHR1-LIKE 2 12 74 - -
Cme06g00381 439 Coils Coil 329 349 - -
Cme06g00381 439 PANTHER PROTEIN PHR1-LIKE 2 108 136 - -
Cme06g00381 439 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 74 IPR044848 GO:0003700
Cme06g00381 439 SUPERFAMILY Homeodomain-like 50 137 IPR009057 -
Cme06g00381 439 Pfam MYB-CC type transfactor, LHEQLE motif 272 317 IPR025756 -
Cme06g00381 439 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 245 436 IPR044848 GO:0003700
Cme06g00381 439 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 108 136 IPR044848 GO:0003700
Cme06g00381 439 PANTHER PROTEIN PHR1-LIKE 2 245 436 - -
Cme06g00381 439 Gene3D - 49 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00381 - - - cmax:111473855 328.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01085 Cme-Chr3:20251671 Cme06g00381 Cme-Chr6:2389842 1.36E-40 dispersed
Cme06g00381 Cme-Chr6:2389842 Cme04g01787 Cme-Chr4:25571642 9.96E-19 dispersed
Cme06g00381 Cme-Chr6:2389842 Cme11g01645 Cme-Chr11:24315395 1.04E-18 transposed
Cme06g00381 Cme-Chr6:2389842 Cme01g01493 Cme-Chr1:19617312 1.16E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g894 . . . . . Bpe14g00844 . . . . . Cma14g01894 Car06g01068 Car14g01696 . Cpe08g00397 Cpe03g01593 Bhi01g00235 . . . . . . . . . . . . . . . Cone7ag0390 . Lsi05g01838 . . Cme06g00381 . . . Bda13g00487 . . Bma02g01204 Bma06g01283 . Cmo06g01253 Cmo14g01946 . . . . . . . . . . . . . Cla05g00348 Cam05g0378 Cec05g0383 Cco05g0383 Clacu05g0372 Cmu05g0357 Cre05g0421 . Csa03g01095 Chy06g00365 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00381 Cme_Chr06 FPKM 6.039809 6.732768 33.188652 30.751667 120.325081 136.284042 130.923065 61.875973 62.488571 64.675064