Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00382 ATGTCGTCAACCTTCAGCGGTGATGAAACGGCACCCTTCTTTGGCTTTCTCGGCGCTGCTGCGGCCCTTGTTTTCTCCTGTATGGGAGCTGCTTACGGGACGGCAAAGAGCGGTGTTGGTGTGGCGTCAATGGGAGTGATGAGGCCGGAATTGGTAATGAAGTCTATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCTAAAGCTAAATCTTATTACCTTTTCGATGGCTACGCTCATCTTTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTATCTGCTGGCATGGCTATCGGAATCGTCGGCGATGCGGGCGTCAGGTACTCTATTTTAACTTATTTAAGCTGA 393 49.36 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYSILTYLS 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2410531 2411812 + MELO3C000065.2.1 Cme06g00382 329531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00382 130 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cme06g00382 130 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cme06g00382 130 Gene3D - 11 125 IPR035921 -
Cme06g00382 130 SUPERFAMILY F1F0 ATP synthase subunit C 87 122 IPR035921 -
Cme06g00382 130 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 124 - -
Cme06g00382 130 PANTHER V-TYPE PROTON ATPASE SUBUNIT C3 3 124 - -
Cme06g00382 130 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cme06g00382 130 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme06g00382 130 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme06g00382 130 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 130 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme06g00382 130 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01656 Cme-Chr3:25321473 Cme06g00382 Cme-Chr6:2410531 1.32E-09 dispersed
Cme03g01900 Cme-Chr3:27140020 Cme06g00382 Cme-Chr6:2410531 1.92E-81 dispersed
Cme04g00385 Cme-Chr4:3091602 Cme06g00382 Cme-Chr6:2410531 1.86E-08 dispersed
Cme06g00382 Cme-Chr6:2410531 Cme06g00383 Cme-Chr6:2410531 1.81E-87 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00382 K02155 - csin:114292490 219.935