Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00385 ATGCATTTAGTAAACTCGATGGAAAAAGACGATAACTACTCGAACGAAGGCTCTATGGCACCAAGTTTCTCCGGCCACCAAGATCTGTACAATAACCAAGACCAATTCATGAGGTCCCGCCCTAATTTCGAGACCTCCGCCGACAACTCCACCGGAATCCTCACCTACTTTCCGGCCAACCCAATAACCTCTCCGGACAAGCTCAGCTTTGGCGAGGTTATGCAGTTCGCGGACTTCGGTCCCAAGCTCAGTCTCAACCGCTTCGACGACGATAGCGAACCGCCCGGCATCGACCCGGTCTACTTCCTAAAATTCCCAGTTTTAAATAACGAAAGAGTGGAGGAGACGGCGACGACGGGCGGAGAGACGGAGGAAGCAGCGGAGATAGGAGGGAGATCGTTAAATATTGTTGGGGAGGTAGAAGAGGAGAATTTTAGGAATAATAACAATAACAACAACAATAATAATGGGAATAATAGTAATAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGTCAAAGGATGACACATATTGCAGTGGAGAGAAACCGAAGGAAACAGATGAATGAGCATCTTCGGGTTCTGCGATCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATTGAGTTCGTGAGAGAGTTAGAGCAACTCCTGCAATGTCTAGAATCCCAAAAACGACGTCGTCTTTTAGGAGAATCACCAATAGTGCAGGCCGCCGACACACCGCCGCCGCAACAACCTCCATTTCTACCGCCAGGAGCAAGTAATTTTGCAGGTCATCAAAACGACGGACAAATATTTGAAACGACAGCTGAAAGCAAGTCGTGCCTTGCTGATGTGGAAGTGAAGGTAATAGGGTTTGACGCTATGATAAAAATCCTATCGAGAAGACGACCGGGACAGCTCATCAAAGCCATTGCAGCACTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAAACTGTTCTCTATTCTTTCAACGTCAAGATAGCTAGCGAATCAAGATTTACGGCGGAAGATATAGCGAGCTCAGTTCAACAAATATTCAATTTTATTCATGCAAACACGGGCATGTGA 1137 46.17 MHLVNSMEKDDNYSNEGSMAPSFSGHQDLYNNQDQFMRSRPNFETSADNSTGILTYFPANPITSPDKLSFGEVMQFADFGPKLSLNRFDDDSEPPGIDPVYFLKFPVLNNERVEETATTGGETEEAAEIGGRSLNIVGEVEEENFRNNNNNNNNNNGNNSNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGESPIVQAADTPPPQQPPFLPPGASNFAGHQNDGQIFETTAESKSCLADVEVKVIGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFNFIHANTGM 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2420541 2425261 - MELO3C006315.2.1 Cme06g00385 329534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00385 378 Pfam Helix-loop-helix DNA-binding domain 178 229 IPR011598 GO:0046983
Cme06g00385 378 Gene3D - 168 243 IPR036638 GO:0046983
Cme06g00385 378 PANTHER TRANSCRIPTION FACTOR FAMA 37 377 - -
Cme06g00385 378 SMART finulus 183 234 IPR011598 GO:0046983
Cme06g00385 378 MobiDBLite consensus disorder prediction 145 162 - -
Cme06g00385 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 228 IPR011598 GO:0046983
Cme06g00385 378 CDD ACT_UUR-ACR-like 304 368 - -
Cme06g00385 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 244 IPR036638 GO:0046983
Cme06g00385 378 ProSiteProfiles ACT domain profile. 304 378 IPR002912 -
Cme06g00385 378 MobiDBLite consensus disorder prediction 145 180 - -
Cme06g00385 378 MobiDBLite consensus disorder prediction 166 180 - -
Cme06g00385 378 MobiDBLite consensus disorder prediction 10 29 - -
Cme06g00385 378 PANTHER TRANSCRIPTION FACTOR FAMA 37 377 IPR044283 GO:0003700|GO:0010052
Cme06g00385 378 MobiDBLite consensus disorder prediction 1 29 - -
Cme06g00385 378 CDD bHLH_AtFAMA_like 180 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01680 Cme-Chr5:25832469 Cme06g00385 Cme-Chr6:2420541 3.61E-53 dispersed
Cme06g00002 Cme-Chr6:17103 Cme06g00385 Cme-Chr6:2420541 7.30E-51 dispersed
Cme06g00385 Cme-Chr6:2420541 Cme06g00643 Cme-Chr6:4141834 3.97E-52 dispersed
Cme06g00385 Cme-Chr6:2420541 Cme04g00117 Cme-Chr4:902979 7.60E-17 transposed
Cme06g00385 Cme-Chr6:2420541 Cme06g02473 Cme-Chr6:31713059 7.41E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41427 PF00010 HLH 7.80E-10 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00385 - - csv:101214530 642.114