Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g00385 | ATGCATTTAGTAAACTCGATGGAAAAAGACGATAACTACTCGAACGAAGGCTCTATGGCACCAAGTTTCTCCGGCCACCAAGATCTGTACAATAACCAAGACCAATTCATGAGGTCCCGCCCTAATTTCGAGACCTCCGCCGACAACTCCACCGGAATCCTCACCTACTTTCCGGCCAACCCAATAACCTCTCCGGACAAGCTCAGCTTTGGCGAGGTTATGCAGTTCGCGGACTTCGGTCCCAAGCTCAGTCTCAACCGCTTCGACGACGATAGCGAACCGCCCGGCATCGACCCGGTCTACTTCCTAAAATTCCCAGTTTTAAATAACGAAAGAGTGGAGGAGACGGCGACGACGGGCGGAGAGACGGAGGAAGCAGCGGAGATAGGAGGGAGATCGTTAAATATTGTTGGGGAGGTAGAAGAGGAGAATTTTAGGAATAATAACAATAACAACAACAATAATAATGGGAATAATAGTAATAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGTCAAAGGATGACACATATTGCAGTGGAGAGAAACCGAAGGAAACAGATGAATGAGCATCTTCGGGTTCTGCGATCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATTGAGTTCGTGAGAGAGTTAGAGCAACTCCTGCAATGTCTAGAATCCCAAAAACGACGTCGTCTTTTAGGAGAATCACCAATAGTGCAGGCCGCCGACACACCGCCGCCGCAACAACCTCCATTTCTACCGCCAGGAGCAAGTAATTTTGCAGGTCATCAAAACGACGGACAAATATTTGAAACGACAGCTGAAAGCAAGTCGTGCCTTGCTGATGTGGAAGTGAAGGTAATAGGGTTTGACGCTATGATAAAAATCCTATCGAGAAGACGACCGGGACAGCTCATCAAAGCCATTGCAGCACTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAAACTGTTCTCTATTCTTTCAACGTCAAGATAGCTAGCGAATCAAGATTTACGGCGGAAGATATAGCGAGCTCAGTTCAACAAATATTCAATTTTATTCATGCAAACACGGGCATGTGA | 1137 | 46.17 | MHLVNSMEKDDNYSNEGSMAPSFSGHQDLYNNQDQFMRSRPNFETSADNSTGILTYFPANPITSPDKLSFGEVMQFADFGPKLSLNRFDDDSEPPGIDPVYFLKFPVLNNERVEETATTGGETEEAAEIGGRSLNIVGEVEEENFRNNNNNNNNNNGNNSNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGESPIVQAADTPPPQQPPFLPPGASNFAGHQNDGQIFETTAESKSCLADVEVKVIGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFNFIHANTGM | 378 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2420541 | 2425261 | - | MELO3C006315.2.1 | Cme06g00385 | 329534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g00385 | 378 | Pfam | Helix-loop-helix DNA-binding domain | 178 | 229 | IPR011598 | GO:0046983 | |
Cme06g00385 | 378 | Gene3D | - | 168 | 243 | IPR036638 | GO:0046983 | |
Cme06g00385 | 378 | PANTHER | TRANSCRIPTION FACTOR FAMA | 37 | 377 | - | - | |
Cme06g00385 | 378 | SMART | finulus | 183 | 234 | IPR011598 | GO:0046983 | |
Cme06g00385 | 378 | MobiDBLite | consensus disorder prediction | 145 | 162 | - | - | |
Cme06g00385 | 378 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 177 | 228 | IPR011598 | GO:0046983 | |
Cme06g00385 | 378 | CDD | ACT_UUR-ACR-like | 304 | 368 | - | - | |
Cme06g00385 | 378 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 177 | 244 | IPR036638 | GO:0046983 | |
Cme06g00385 | 378 | ProSiteProfiles | ACT domain profile. | 304 | 378 | IPR002912 | - | |
Cme06g00385 | 378 | MobiDBLite | consensus disorder prediction | 145 | 180 | - | - | |
Cme06g00385 | 378 | MobiDBLite | consensus disorder prediction | 166 | 180 | - | - | |
Cme06g00385 | 378 | MobiDBLite | consensus disorder prediction | 10 | 29 | - | - | |
Cme06g00385 | 378 | PANTHER | TRANSCRIPTION FACTOR FAMA | 37 | 377 | IPR044283 | GO:0003700|GO:0010052 | |
Cme06g00385 | 378 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cme06g00385 | 378 | CDD | bHLH_AtFAMA_like | 180 | 248 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g01680 | Cme-Chr5:25832469 | Cme06g00385 | Cme-Chr6:2420541 | 3.61E-53 | dispersed | |
Cme06g00002 | Cme-Chr6:17103 | Cme06g00385 | Cme-Chr6:2420541 | 7.30E-51 | dispersed | |
Cme06g00385 | Cme-Chr6:2420541 | Cme06g00643 | Cme-Chr6:4141834 | 3.97E-52 | dispersed | |
Cme06g00385 | Cme-Chr6:2420541 | Cme04g00117 | Cme-Chr4:902979 | 7.60E-17 | transposed | |
Cme06g00385 | Cme-Chr6:2420541 | Cme06g02473 | Cme-Chr6:31713059 | 7.41E-17 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41427 | PF00010 | HLH | 7.80E-10 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g00385 | - | - | csv:101214530 | 642.114 |