Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00400 ATGGCTGGTATCGATGTTTCGAAGTATGCACATAGCCCTGTACACAAGGCTGTTGCCACCAGGGATTATACCAATCTCAAGAAAATCCTTGCTGGACTTCCACGGCTTTGTAATCCATCTGAGATTCGCACCGAGGCTGCTTCATTAGCTGAGGAAAACAAGGCTGATGCCATTTCTGCCGTCGTCGATCGTCGAGATGTTCCGAATAGAGATACTCCATTGCATTTGGCTGTAAAGCTCGGGGATGAGACTGCTACCGAAATGCTTATGGTTGCTGGGGCAGATTGGAGCTTGCAGAACGAGCATGGTTGGAGTGCACTTCAGGAAGCAATTTGCAGTAGACAAGAAGGGATTGCCATGATAATAGTCCGGCATTACCAGCCATTGGCTTGGGCAAAATGGTGTCGGAGATTGCCTCGCTTGATTGAGACTATGCGAAGAATGAAGGATTTCTACATGGAAATTACGTTCCACTTTGAGAGTTCAGTGATCCCTTTCATTTCTAGGATTGCTCCTTCAGATACATATAAGATCTGGAAAAGAGGTGCTAACTTGAGGGCAGACATGACACTGGCTGGTTTCGATGGATTTAGGATCCAACGTGCCGATCAGAGTATTCTTTTTCTTGGAGATGGGACAGAGGATGGGAAAGTACCTTCTGGGTCACTCTGTATGATCTCACACAAGGAAAAAGAGGTAATGAATGCTTTGGACGGTGCTGGTGCTCAGGCAACTGAAGAAGAGATTAGACAGGAAGTGACAGCAATGTCTCAGACTAATATATTTAGACCTGGAATTGATGTCACTCAGGCTGTTCTTTTGCCTCAGTTGACTTGGAGGCGCCAGGAGAAAACTGAATTGGTAGGTGCCTGGAAAGCTAAAGTATATGATATGCATAATGTGGTTGTTAGTATCAAATCCAGGAGGGTCCCTGGGGCAATGACAGATGACGAATTCTTCTCATCGTGCAATGAAAATGAAACTGAGAGTGAGGAGTTTGATGACATTTTAACTGAGGATGAACGAAAGCAACTTGAGAATGCACTTAAATTAGATTCGTCTGAATTAAGTTCTGAAAATGGTGATGGGATTGTTGCACATCGGCACAGTTGTTTTGAGCAGAGGGAGGTTCCTATTGAGGATGTAAATGGATGTAGAAATGGAGAGACTCGGCAGGAAAAGAAAGGATGGTTTGGGGGATGGAGGAAACGTGATAGCAAAAATGAAGGGCAAAAGAAGATTGCTCCTCCAAGAAGCTCCCTTTCTATGGATGATAAGGTAAGTGATCTTCTAGGGGACTGTCCTCCTGAAAACAATAGCAGCAGGCCTGGAAGACATTCTGTAGAGATAGTGTCTGAACACCGAAGAGGAAGGGATACCAGATCTACCTCTTCGACGTCTGAGAGCAAAAATCGGCACAAGGATGGGAGCCATGAAAATGAGTATAAGAAAGGGTTGAGACCTGTTCTATGGCTTTCTCCGAACTTTCCTCTACAAACTGAAGAACTATTGCCATTGCTAGATATTTTAGCTAACAAGGTCAAGGCAGTTCGTCGTTTGAGAGAACTGCTTACCACAAAACTCCCGCTGGGAACCTTTCCGGTCAAGGTTGCCATCCCTGTGGTTCCAACCATCAGAGTGATTGTTACCTTCACAAAGTATGAAGAACTACAGCCAGTGGACGAATTTGCAACGCCACCATCGAGCCCTACAGCTGCACCACGCAGGGATAGCCCTTCCGTGACAAGTGCCTTGAGTTCATCTTGGTTTCAATGGATAAAAGCCCCATATCAACGCCCGAGCACATCGACCAGTGTTTCTAGCAGTAGTAGAATAGAAACTCTCGAAGACCCATTTGTCATTCCCCGCGATTACACCTGGGTTACTGCAGAAGCAAAGAAAAGAAGATGCAGGAAAAGAACAAAGCAAAGAAAGGAAGAAATCGCCGCGATTGATTGA 1959 45.33 MAGIDVSKYAHSPVHKAVATRDYTNLKKILAGLPRLCNPSEIRTEAASLAEENKADAISAVVDRRDVPNRDTPLHLAVKLGDETATEMLMVAGADWSLQNEHGWSALQEAICSRQEGIAMIIVRHYQPLAWAKWCRRLPRLIETMRRMKDFYMEITFHFESSVIPFISRIAPSDTYKIWKRGANLRADMTLAGFDGFRIQRADQSILFLGDGTEDGKVPSGSLCMISHKEKEVMNALDGAGAQATEEEIRQEVTAMSQTNIFRPGIDVTQAVLLPQLTWRRQEKTELVGAWKAKVYDMHNVVVSIKSRRVPGAMTDDEFFSSCNENETESEEFDDILTEDERKQLENALKLDSSELSSENGDGIVAHRHSCFEQREVPIEDVNGCRNGETRQEKKGWFGGWRKRDSKNEGQKKIAPPRSSLSMDDKVSDLLGDCPPENNSSRPGRHSVEIVSEHRRGRDTRSTSSTSESKNRHKDGSHENEYKKGLRPVLWLSPNFPLQTEELLPLLDILANKVKAVRRLRELLTTKLPLGTFPVKVAIPVVPTIRVIVTFTKYEELQPVDEFATPPSSPTAAPRRDSPSVTSALSSSWFQWIKAPYQRPSTSTSVSSSSRIETLEDPFVIPRDYTWVTAEAKKRRCRKRTKQRKEEIAAID 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2554511 2559042 - MELO3C006330.2.1 Cme06g00400 329549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00400 652 SUPERFAMILY Ankyrin repeat 62 128 IPR036770 -
Cme06g00400 652 SMART ANK_2a 9 38 IPR002110 GO:0005515
Cme06g00400 652 SMART ANK_2a 102 131 IPR002110 GO:0005515
Cme06g00400 652 SMART ANK_2a 69 98 IPR002110 GO:0005515
Cme06g00400 652 Gene3D - 3 127 IPR036770 -
Cme06g00400 652 MobiDBLite consensus disorder prediction 396 412 - -
Cme06g00400 652 MobiDBLite consensus disorder prediction 447 481 - -
Cme06g00400 652 MobiDBLite consensus disorder prediction 396 481 - -
Cme06g00400 652 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Cme06g00400 652 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Cme06g00400 652 PANTHER BNAA08G28070D PROTEIN 3 645 - -
Cme06g00400 652 MobiDBLite consensus disorder prediction 561 580 - -
Cme06g00400 652 Pfam GPCR-chaperone 186 626 IPR021832 -
Cme06g00400 652 PANTHER UNCHARACTERIZED WITH ANKYRIN REPEAT DOMAIN 3 645 IPR021832 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00400 K21437 ANKRD13; ankyrin repeat domain-containing protein 13 - csv:101217083 1200.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01127 Cme-Chr5:17774146 Cme06g00400 Cme-Chr6:2554511 0 dispersed
Cme06g00400 Cme-Chr6:2554511 Cme08g00406 Cme-Chr8:2496314 7.69E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g883 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00400 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00365 Cam05g0397 Cec05g0402 Cco05g0402 Clacu05g0392 Cmu05g0377 Cre05g0440 . Csa03g01118 Chy06g00386 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000559 4 5 4 4 3 3 5 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 4 3 3 2 7 4 1 107
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00400 Cme_Chr06 FPKM 32.198334 32.128494 27.805265 22.86647 17.114861 18.265575 15.922794 25.005291 23.666527 22.951971