Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00403 ATGGCCTCACCATCGTCTTCTTCGTCGTACTTGAATTCAGCCTGTGCGCTTCTCGCTGTTCTGGATTTGGACGAGAAACACAACGAGAGCATGAAGGAGATGGAGACTGAATGGATTGTGGATGTTCCTGATACACCTGATCGGTTAGCTGCCCGACAGATTAGTGGCGGACAGTTTCTTCAGACAGAGACTGGTTCTTCTTTATCCAATCGTTTGAGAAACCCTGATTTCATGATGGAAAAGGGAACTAATGGCATGAAGGGAGTGGGGGTGCTTGCCAGTGAAAATGGGCATGATTCGAGACTAGATAGGAGTTCCAAAAATATTCCGTGTGAGGATTTTATGGGTAGTAAAAACACCATTATTCTTTCACCGGGAGAGAATCCTAATGCATTGCAAAATAATCTTTTACTTAGAAAAGGTGGAAGGGAAAAATATTCATGTCAGGGGCCAAAACGTTTTATTTGCCCTCGTCGTGTGGATAAAGGGATAAATATATCTGTTGACTCTCCTTCCAAACCACCTCCTTGTCAAGAAAATACTGCAGTTCCACAAATGAGAGAACATGATCTCAAGTATAAACCTCAAACAGTTGATCGTCATGTGGCTAAGGATTTTAAGATTGAGAACACATCAAACGAACAGTCTGCAAGTTACATGTCAATTGCTTCAAAGAAACCCAACGTGAACACTAAAGGGAAGGAGAAGGTTGTTGAGGAATCATTCCAAGATGTTGGTTTATCCATGATTAATAGAAATGGAATTGAAAAATCCAATAGCAGCAATAATCGACATGAGAAGCAAGGTTTGGGTCCTCGTCAGTTTGTTAGTTCACCTAGAGCCACTGGACATAAAAGATTGGTACGAAATGGTTGTATCTCACCTCATAATATTGCAATAAGAGCAAAAAGTTTATCTGAGCAGCGTGAAAAGAGTTCTAGAGATGTTGACAAGAGCAATTTGGGGAACATGCCATCAAGCAGTCCATCTTGTCCAATAGATATAAATGATATAGTTGCTGAAGACAATTGTAGTAACAAAGATAAAGGAAAAGGGATTATGCGTCAACCTTCTATATCACATGATAAGGATGACGTCAGAGTTATTTTTTCATCCAGCAGTGACACAGGAAAGGATGTTGGAGCAAATCCAGGCAGATCTTCCAGATCAGGTACATCTGAACATTGTGAAAAAGTAGGTGTTTGGAGAAGAACACATAATCATTTGAAGAATGGGATTGTCTTGTCTAATCCATCTGGGAATTCTTTTAAGAAGATAGATAGTGTTGGAAGGCTGTCTAATGGAAAAACTGAGATTGTCATGGAGAGACAAATTCCTAGCAGGCAAGAACTCATAGCAGAAGCTGATTGTGGAGGAAGTGCTGATACGTCTCAAAGGGATTCCCCCAAATTAGATCGGACTAATGGACCAATTCATGCGGAAAGCAAATTAAACAAAAAACAAAAGAAACATGAATCAACTTCACAAATTAATTCTTCACGCCGCATTCCAGATGTCGTGTGCCTCGGTACATCCGGGGAGTCTTCAAATTCAAGGTCAACTAGACTGCGGAGTAAAATATTTTGTGATAATTTGAATGAAGTTATTGAGGTTGATGAGTTGTCGCCTGAAATGAGACACCCTGTCTCCCAGACTGGTGGTAGCTTAAATGATGACACCTCAGATGTTAGGGCAAGACAACTTGAAGCTGACGAGATTTTGGCTCGTGAACTTCAGGAACAACTATATCAGGAGATGCCTATTGGAGGAGAAGAGATTGATGAACATTTAGCCATGGCACTGCAGCAGGTGGAACATGGCCTTCTTGCACCGTCCCGCCGGAGTCACAATAGTCAGAGGGGCTCGCTGGTAGCACAGGCCAACCGACGCACTCGTTCTCAATCTTTACAAAACCCTTCCAATAGAACGCGAACTCGAGTAACTCACTCTGCACGAATGGCACAGATAAGGAATCAATTTTTTGGTGGCTCTCATAGAGTGTCGACTAGACAAAGGAATCTTAATTTTCCTATGCATATGGATTTAGATATGAGACTTGATATATTGGAAGCTCTGGAGGCTGCGGTTGGAGATATGGATGATGTGAGAATGAATAGGGACATCTTGCACATCCAGCGTGATTTCAATGAGAATGATTATGAAATGCTGCTATCCCTTGACGAGAACAATCACCGCCATGCTGGTGCATCTACTAACCGGATTAATAGTTTGCCACAATCTACTGTACAGACTGACAGCACACAAGAAGCTTGTGCAATTTGTCTGGATACGCCAACCATTGGAGATGTCATTCGCCATCTACCTTGTTTACACAAATTTCACAAAGATTGTATCGATCCATGGCTACAGAGACGAACATCGTGCCCGGTTTGTAAGTGCTCAATCACTTGA 2412 41.87 MASPSSSSSYLNSACALLAVLDLDEKHNESMKEMETEWIVDVPDTPDRLAARQISGGQFLQTETGSSLSNRLRNPDFMMEKGTNGMKGVGVLASENGHDSRLDRSSKNIPCEDFMGSKNTIILSPGENPNALQNNLLLRKGGREKYSCQGPKRFICPRRVDKGINISVDSPSKPPPCQENTAVPQMREHDLKYKPQTVDRHVAKDFKIENTSNEQSASYMSIASKKPNVNTKGKEKVVEESFQDVGLSMINRNGIEKSNSSNNRHEKQGLGPRQFVSSPRATGHKRLVRNGCISPHNIAIRAKSLSEQREKSSRDVDKSNLGNMPSSSPSCPIDINDIVAEDNCSNKDKGKGIMRQPSISHDKDDVRVIFSSSSDTGKDVGANPGRSSRSGTSEHCEKVGVWRRTHNHLKNGIVLSNPSGNSFKKIDSVGRLSNGKTEIVMERQIPSRQELIAEADCGGSADTSQRDSPKLDRTNGPIHAESKLNKKQKKHESTSQINSSRRIPDVVCLGTSGESSNSRSTRLRSKIFCDNLNEVIEVDELSPEMRHPVSQTGGSLNDDTSDVRARQLEADEILARELQEQLYQEMPIGGEEIDEHLAMALQQVEHGLLAPSRRSHNSQRGSLVAQANRRTRSQSLQNPSNRTRTRVTHSARMAQIRNQFFGGSHRVSTRQRNLNFPMHMDLDMRLDILEALEAAVGDMDDVRMNRDILHIQRDFNENDYEMLLSLDENNHRHAGASTNRINSLPQSTVQTDSTQEACAICLDTPTIGDVIRHLPCLHKFHKDCIDPWLQRRTSCPVCKCSIT 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2573969 2581624 + MELO3C006332.2.1 Cme06g00403 329552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00403 803 Pfam Ring finger domain 757 799 IPR001841 -
Cme06g00403 803 SUPERFAMILY RING/U-box 753 802 - -
Cme06g00403 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 724 803 IPR013083 -
Cme06g00403 803 MobiDBLite consensus disorder prediction 372 395 - -
Cme06g00403 803 MobiDBLite consensus disorder prediction 303 317 - -
Cme06g00403 803 MobiDBLite consensus disorder prediction 372 390 - -
Cme06g00403 803 SMART ring_2 758 798 IPR001841 -
Cme06g00403 803 MobiDBLite consensus disorder prediction 302 335 - -
Cme06g00403 803 MobiDBLite consensus disorder prediction 612 645 - -
Cme06g00403 803 MobiDBLite consensus disorder prediction 253 278 - -
Cme06g00403 803 PANTHER - 334 801 - -
Cme06g00403 803 MobiDBLite consensus disorder prediction 456 501 - -
Cme06g00403 803 MobiDBLite consensus disorder prediction 253 268 - -
Cme06g00403 803 MobiDBLite consensus disorder prediction 466 496 - -
Cme06g00403 803 MobiDBLite consensus disorder prediction 611 645 - -
Cme06g00403 803 CDD RING-H2_PA-TM-RING 758 799 - -
Cme06g00403 803 MobiDBLite consensus disorder prediction 318 333 - -
Cme06g00403 803 ProSiteProfiles Zinc finger RING-type profile. 758 799 IPR001841 -
Cme06g00403 803 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 334 801 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00403 - - - csv:101205482 1544.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00167 Cme-Chr3:2087251 Cme06g00403 Cme-Chr6:2573969 1.15E-17 dispersed
Cme06g00403 Cme-Chr6:2573969 Cme12g01797 Cme-Chr12:24472027 4.77E-13 dispersed
Cme06g00403 Cme-Chr6:2573969 Cme09g00271 Cme-Chr9:2090379 5.59E-11 transposed
Cme06g00403 Cme-Chr6:2573969 Cme05g01848 Cme-Chr5:27283306 3.47E-11 transposed
Cme06g00403 Cme-Chr6:2573969 Cme10g00909 Cme-Chr10:6589305 2.44E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g855 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00403 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008707 0 2 1 1 1 0 2 0 0 1 0 0 2 1 1 2 0 3 2 0 1 1 1 1 1 0 1 6 2 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00403 Cme_Chr06 FPKM 9.762697 11.692537 23.076536 22.001928 9.548629 11.336068 9.083654 3.707393 4.620749 5.251357