Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00406 ATGGGTGTTGGCCCGGCTGCTGCAATTCCAGCTGCTGTCAAGGCTGCTGGACTTGAACTGAATGATATTGATCTTTTTGAGATAAATGAGGCATTTGCTTCCCAATTTGTGTATTGTCGTGAGAAGTTGGGGCTAGATCCAGAAAAGATCAATGTCAATGGAGGAGCAATCGCCATTGGACATCCACTGGGTGCAACAGGTATGTTTCAAAAACACATAGTTTCTATGAACGAACACTTCAAATGA 246 43.5 MGVGPAAAIPAAVKAAGLELNDIDLFEINEAFASQFVYCREKLGLDPEKINVNGGAIAIGHPLGATGMFQKHIVSMNEHFK 81
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2586059 2586440 - MELO3C032616.2.1 Cme06g00406 329555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00406 81 Pfam Thiolase, C-terminal domain 1 69 IPR020617 GO:0016747
Cme06g00406 81 SUPERFAMILY Thiolase-like 1 71 IPR016039 GO:0016746
Cme06g00406 81 ProSitePatterns Thiolases signature 2. 51 67 IPR020613 GO:0016747
Cme06g00406 81 PANTHER 3-KETOACYL-COA THIOLASE, PEROXISOMAL 1 68 - -
Cme06g00406 81 Gene3D - 1 77 IPR016039 GO:0016746
Cme06g00406 81 PANTHER 3-KETOACYL-COA THIOLASE 1, PEROXISOMAL 1 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00406 K07513 ACAA1; acetyl-CoA acyltransferase 1 [EC:2.3.1.16] - csv:101217710 130.954
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme05g00692 Cme06g00406 CCT
Cme05g00692 Cme06g00406 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00692 Cme-Chr5:7987236 Cme06g00406 Cme-Chr6:2586059 1.25E-28 dispersed
Cme06g00406 Cme-Chr6:2586059 Cme07g00948 Cme-Chr7:10043440 2.27E-26 dispersed
Cme06g00405 Cme-Chr6:2585273 Cme06g00406 Cme-Chr6:2586059 2.36E-40 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g853 Blo01g00318 . Bda03g01115 Bda08g00024 Bpe04g01060 . Bma04g01043 Bma05g01277 . Cmo17g00117 . Cma14g01876 . Car14g01678 . . Cpe03g01574 . . . . . . . Cla06g00741 Cam06g0794 Cec06g0799 . Clacu06g0793 Cmu06g0766 Cre06g1547 Cone14ag0211 Cone15ag0232 . . Lsi05g01816 . Chy05g00544 Cme06g00406 . . . . Bpe05g01132 . . . Sed02g1473 . Cmo14g01924 . Cma17g00114 . Car17g00101 Cpe12g00100 . Bhi12g01513 Tan06g2323 Cmetu05g1421 . . . Lcy13g0447 Cla05g00368 Cam05g0401 Cec05g0406 Cco05g0406 Clacu05g0396 Cmu05g0381 Cre05g0443 Lsi09g01159 Csa03g01124 Chy06g00390 Cme05g00692
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018978 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00406 Cme_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0