Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00407 ATGGCTAGGGAAGTACATGGCGTTTTAAGCCAACAATTATACATGGAAAGACCGAGGGTTGTTTCGGATGTACGGATTACTGCAGATCATAGTGTGAGTGATGTTTGTGTACAGACGGGTGAGGTATTTTCTCCACAGTTTATGCGAGATCGTGTTGCGCTAAGAAGATTTTCTGACATGAGTGATGGAGATCAACAACAGCAGCAGCAAAAGAGAACAGGTTTTGGGTTCAATCCGAGCAACCAATTGGTGTATGAGGATCTTAGTGGAATTCTTGGACTCAAGAGGATGAATTCTGAAAGTAGTTCAGAAATGTCATCAACGCCAATGGCTGCTTATGCAGCTGAAAAGGACACCAAGGTTTATCCTAATACCACAAGCAAATGTCAGTGGGAATATAACAATGGTACTGGACAAACATCTGTAGCATATGCCGACGAAACTAACCGAGGAGTTCAAATTGGCCCCATGGTGCCGGCCTTGTATCCGTTGGATTCGCCTCGTTCATGTTATCCTTGTGGGACTGGATTTGGAGATTTCTCTGCCAACGACAAGATGAAATTTCTCTGTAGTTTTGGAGGTAGAATATTACCAAGGCCTAATGATGGGAAGCTTAGATATGTAGCTGGAGAAACGCGCATCATATCCATTAGGAAAAACATCTCATATGAAGAACTTACCAAAAAGACATACGCTGTCTGTAAATATGCCCACACGATAAAGTACCAGCTTCCTGGTGAAGATCTTGATTCACTTATCTCTGTCTGTTCTGATGAGGATCTTCATCATATGATAGAGGAATATCAGGAGCTGGAAAACGCAGAAGGTTCTCAGAGACTTAGAATTTTTCTTATTTCTTCAAATGATTGTTGTGAGAGTCCTCCTTCTATTGAAGGAAGGGTAGTTCAACCGATTGATGTGGATTATCAATATGTTGCTGCTGTGAATGGTATTCTAGATCCGAGTCTTCGAAGGAGCTCCAGTGGGCAGAGTTTCACAAGCCAGAATAGCCAGGTGGGAGCCATCTCAGACCATAGTTCCAATTTTCGTACTGATTCGTCACATGCCACAGACGCGAAAGATGTCAGTTCACCAATGACAAATTTGGCGGGAATGTTACCTAGACCAGGTGGTCAATTGTTAAATCCCATTCAAGTCCCACGCAAGTCAATAAATCAATCACCTTTAATTTCTCCGGTTACTGTAATGCAAAAAGATTTTAGGAATGTGGATGCAACATATGCAGAAGATGCTAGAAACTTCACTCCATGTGTTTCAGGAAAACATCCATGTGATTCGGTTTATTATGTTGATGCAATGGGCCGTCACAATCATCTTTACCATGGTTCTCCATTGATGAATTATTATCATGAAAAATCTACTGCGGAAACTGATGAGACATACAAAGTTCTTAATATTCATTTCCCACGAAGCTCAAGTGAGGATTTTGTGCCTGCACCCAACTGGGGTCTAAGTGATACACATCCACTGAAAACTATGCTCAAGGAACGGGCAGTTAATTATGAACAACTATGTTCTGATGCGGAGTATTTGATGCAGCTAAGATCGGGAACCATCCATATGGGACAAAGAATTATGCATTCGCATTCTGAGCCCATACTGCTGGAGCAGGATCAAAAGCCGAATCATGGAGGGCCCTATCCACTGACCTCATTCAATGATAGTGATCAGTCACCTTCACTTGCAATGTCAAGTTCCTTGCAGGATTTGCCAACAATGTGGAAACAGAGAGATGGCATGGAATTTCAAGATGCTAAATATGAGAATCATCAAAAGTTGACATCTGGTAGAGATAATGAAACATATGGAGAATGCAATTTGGACAAAAAGAAGAATAATTTCAATGGAAGTATTTATGCTCCATCACTTAATGATGAAGGAAAATACAGATATTTGCAACATGCTGACTACCGACAAAATGGTTGCCGCCCCAAAGAAGTTCAAAACCTTAGAGGTAGATCTTCTGCCGAACGAAGTATTGAATTAGAAAATTCTGCAGATACCATGGGTGCCCCTTCCCTCGTCTACCATTTTGAAAGAACTGCTCCAAAAAATTTCGAGGAGAGCCAATATTCTACCAAGGATCAACCAACTAATTCTGATATAGTAAGGAGCCAACCACTATCTTGCACTTCTTCTGATCTACTACCTCACACAATTCAAGCTTTCAACGATGTAAAGATCATAAATCAGGAACCAACATGGAATAGTTCTGCTTCAGGTAGAGAGGTTTCTCTAGGCGATGAGAACTTTGTAACCTGTCATTACTGCAAGGTTGCAGCCCATAGCAGAAGAAAGAGCAACTGTGATGATGCTATATCACACTCAGATGATTCTCATGGCAATGAGGATGAAGAGTTAGCTGTAATAGTTGAAGATGTAACTCATAGTATGCCTCCTGACATACCCTTAGCTTCAGGAATTGTCCCACGGGTTGAAAATGAAGCCAGCGATGAATTTCCATCGTCAAGAGGAAATGATGCTCTGAGTTCTAGTTCAGAAACTGACCATGAGGATGCCGACAGTATTCTTAGTTCAAGGGACGATTCTATGAGTGAGGCAGCAATAGCTGAAATCGAAGCAGGCATCTACGGCCTGCAGATAATAAAGGATGCAGATCTTGAAGAACTGCAAGAGTTGGGATCTGGGACATTTGGCACAGTTTTTCATGGGAAATGGAGGGGAACAGATGTTGCTATTAAGAGAATAAAAAAGAGTTGCTTCTCAGGCAGTTTTTCAGAGCAAGAACGACTGACTAGAGATTTCTGGAGGGAAGCAAGGATTCTATCGACTCTTCACCATCCGAACGTTTTGGCTTTTTATGGGGTGGTTCCTGATGGACCTGATGGAACATTAGCAACTGTAACCGAGTACATGGTAAACGGGATATTGAAACTTCAGTATTCTCACTGCAGAGTGCTTGATCGTCGGAAAAGGCTTATAATTGCAATGGATGCAGCGTTTGGAATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATCTGAAATGTGATAATTTGTTAGTCAACTTGAGGGACCCTGAACGACCTATATGCAAGGTCGGAGATTTTGGGTTGTCAAGAATTAAGCGCAATACACTTGTTTCTGGAGGTGTGCGTGGAACTCTTCCATGGATGGCACCAGAATTGTTAGACAGTACCAGTTCTAAGGTGGATGTTTTCTCATTCGGTATTGCAATGTGGGAGATTTTGACAGGCGAGGAGCCATATGCTAACATGCATTGTGGTGCCATCATCGGTGGAATTGTAAGTAATACTCTTAGACCGCCGATCCCCAAACGTTGCGATCCCGAATGGAGAAAGCTAATGGAAGAGTGTTGGTCTCCTGAACCTGCAGCAAGACCATCATTCACAGAGATAGCAAATAGACTTCGCAGCATGTCGGTAGCGCTTCAGATCAGAAAGAGGCCAAATGTAGCAAGTAGATGA 3474 42.03 MAREVHGVLSQQLYMERPRVVSDVRITADHSVSDVCVQTGEVFSPQFMRDRVALRRFSDMSDGDQQQQQQKRTGFGFNPSNQLVYEDLSGILGLKRMNSESSSEMSSTPMAAYAAEKDTKVYPNTTSKCQWEYNNGTGQTSVAYADETNRGVQIGPMVPALYPLDSPRSCYPCGTGFGDFSANDKMKFLCSFGGRILPRPNDGKLRYVAGETRIISIRKNISYEELTKKTYAVCKYAHTIKYQLPGEDLDSLISVCSDEDLHHMIEEYQELENAEGSQRLRIFLISSNDCCESPPSIEGRVVQPIDVDYQYVAAVNGILDPSLRRSSSGQSFTSQNSQVGAISDHSSNFRTDSSHATDAKDVSSPMTNLAGMLPRPGGQLLNPIQVPRKSINQSPLISPVTVMQKDFRNVDATYAEDARNFTPCVSGKHPCDSVYYVDAMGRHNHLYHGSPLMNYYHEKSTAETDETYKVLNIHFPRSSSEDFVPAPNWGLSDTHPLKTMLKERAVNYEQLCSDAEYLMQLRSGTIHMGQRIMHSHSEPILLEQDQKPNHGGPYPLTSFNDSDQSPSLAMSSSLQDLPTMWKQRDGMEFQDAKYENHQKLTSGRDNETYGECNLDKKKNNFNGSIYAPSLNDEGKYRYLQHADYRQNGCRPKEVQNLRGRSSAERSIELENSADTMGAPSLVYHFERTAPKNFEESQYSTKDQPTNSDIVRSQPLSCTSSDLLPHTIQAFNDVKIINQEPTWNSSASGREVSLGDENFVTCHYCKVAAHSRRKSNCDDAISHSDDSHGNEDEELAVIVEDVTHSMPPDIPLASGIVPRVENEASDEFPSSRGNDALSSSSETDHEDADSILSSRDDSMSEAAIAEIEAGIYGLQIIKDADLEELQELGSGTFGTVFHGKWRGTDVAIKRIKKSCFSGSFSEQERLTRDFWREARILSTLHHPNVLAFYGVVPDGPDGTLATVTEYMVNGILKLQYSHCRVLDRRKRLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDSTSSKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDPEWRKLMEECWSPEPAARPSFTEIANRLRSMSVALQIRKRPNVASR 1157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2589960 2596189 - MELO3C006335.2.1 Cme06g00407 329556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00407 1157 Gene3D Phosphorylase Kinase; domain 1 874 969 - -
Cme06g00407 1157 MobiDBLite consensus disorder prediction 325 363 - -
Cme06g00407 1157 CDD PB1_UP2 189 285 - -
Cme06g00407 1157 MobiDBLite consensus disorder prediction 838 853 - -
Cme06g00407 1157 CDD STKc_MAP3K-like 887 1139 - -
Cme06g00407 1157 PANTHER SERINE-THREONINE PROTEIN KINASE 121 1151 - -
Cme06g00407 1157 Pfam PB1 domain 201 284 IPR000270 GO:0005515
Cme06g00407 1157 SMART PB1_new 200 287 IPR000270 GO:0005515
Cme06g00407 1157 Gene3D Transferase(Phosphotransferase) domain 1 973 1155 - -
Cme06g00407 1157 SMART serkin_6 881 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00407 1157 ProSitePatterns Protein kinases ATP-binding region signature. 887 912 IPR017441 GO:0005524
Cme06g00407 1157 Gene3D - 204 288 - -
Cme06g00407 1157 PRINTS Tyrosine kinase catalytic domain signature 999 1017 IPR001245 GO:0004672|GO:0006468
Cme06g00407 1157 PRINTS Tyrosine kinase catalytic domain signature 1066 1088 IPR001245 GO:0004672|GO:0006468
Cme06g00407 1157 PRINTS Tyrosine kinase catalytic domain signature 1110 1132 IPR001245 GO:0004672|GO:0006468
Cme06g00407 1157 SUPERFAMILY Protein kinase-like (PK-like) 873 1138 IPR011009 -
Cme06g00407 1157 SUPERFAMILY CAD & PB1 domains 201 289 - -
Cme06g00407 1157 Pfam Protein tyrosine and serine/threonine kinase 883 1139 IPR001245 GO:0004672|GO:0006468
Cme06g00407 1157 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 121 1151 - -
Cme06g00407 1157 ProSiteProfiles Protein kinase domain profile. 881 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00407 1157 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1005 1017 IPR008271 GO:0004672|GO:0006468
Cme06g00407 1157 MobiDBLite consensus disorder prediction 821 855 - -
Cme06g00407 1157 MobiDBLite consensus disorder prediction 59 79 - -
Cme06g00407 1157 MobiDBLite consensus disorder prediction 60 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00407 - - - csv:101205945 2173.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00646 Cme-Chr2:7542838 Cme06g00407 Cme-Chr6:2589960 1.22E-63 dispersed
Cme06g00407 Cme-Chr6:2589960 Cme12g01538 Cme-Chr12:22845384 4.64E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g850 . . . . . Bpe14g01297 . . . . Cma06g01264 Cma14g01874 Car06g01086 Car14g01677 . Cpe08g00383 Cpe03g01573 . . . . . . . . . . . . . . . . . Cone4ag0386 . . . Cme06g00407 . . . Bda13g00024 . . . . . Cmo06g01273 Cmo14g01923 . . . . . . . . . . . . . Cla05g00369 Cam05g0402 Cec05g0407 Cco05g0407 Clacu05g0397 Cmu05g0382 Cre05g0444 . Csa03g01125 Chy06g00391 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64931 PF07714 PK_Tyr_Ser-Thr 1.10E-56 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00407 Cme_Chr06 FPKM 0.652856 0.0 1.141691 1.468809 0.304835 0.631936 0.366992 2.573738 1.309648 1.422161