Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00410 ATGGCAATGGCGGAATCTGGAAAATGGATTCGTTTGATTCTTCTTGTGATGTTCATGTTGTTTGTCGGAGCAATTGCTAGAGTTCCCAAAGAGATTCCTGAAACTGAGAATGGAGGAAGTGAGAAGTTGCAGAGCTCAAGCAACTCAACGATGGCGGTGAGGTTGGATGAGACTAAGGATCTCGGTAATGAGCATGCTGTGGACAACCCAGAAGAGATTGCTGCTATGGTTGACATGAGTATCCGCAATGCTACTGCGAGGAGAGAGCTCGGTTTCTTCTCTTGTGGAACCGGCAATCCTATTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTCGCAGATTGTGGCATTGGCTTTGGCCGAAACGCCATCGGTGGCCGTGACGGTCGATTTTATGTTGTCACTGACTCGGGCGACGACAACCCTGTCAACCCAAAGCCTGGTACTTTGCGACATGCCGTCATCCAGGACGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAATAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCCTCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGAAGCTCACCCAATCACGTTGGGTGGAGAACAATTGCTGATGGTGATGCCATTTCCATTTTTGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGTCTCGTTGACGCTGTCATGGGATCCACTGCCATTACCATCTCCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTAGGACATAGTGATTCTTACGTTAGAGATAAACTGATGCAAGTGACCATTGCTTACAATCACTTTGGTGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATCGGTGGAAGTGCAAATCCAACCATCAATAGTCAGGGTAACAGATATGCTGCCCCAACCAACCCTTTTGCAAAAGAGGTAACAAAGAGAGTTGAGACAGCTGAAAGTGAGTGGAAAGGCTGGAATTGGAGATCAGAAGGAGACCTTTTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCGGGGGCCTCAGCAAGTTATGCTAGAGCTTCAAGCTTGGGAGCTAAATCTTCATCCATGGTTGGTACCATAACATCCAATGCCGGTGCACTTTCCTGCCGAAGAGGCCACCCGTGCTAG 1344 46.8 MAMAESGKWIRLILLVMFMLFVGAIARVPKEIPETENGGSEKLQSSSNSTMAVRLDETKDLGNEHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDNPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTIADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKGWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHPC 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2629054 2634424 + MELO3C006338.2.1 Cme06g00410 329559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00410 447 Gene3D - 98 440 IPR012334 -
Cme06g00410 447 SUPERFAMILY Pectin lyase-like 75 442 IPR011050 -
Cme06g00410 447 PANTHER PECTATE LYASE 18-RELATED 14 444 IPR045032 GO:0030570
Cme06g00410 447 PANTHER PECTATE LYASE 14 444 - -
Cme06g00410 447 Pfam Pectate lyase 184 362 IPR002022 -
Cme06g00410 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Cme06g00410 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Cme06g00410 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Cme06g00410 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Cme06g00410 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Cme06g00410 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Cme06g00410 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Cme06g00410 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Cme06g00410 447 SMART amb_all 173 370 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01236 Cme-Chr3:21945807 Cme06g00410 Cme-Chr6:2629054 0 dispersed
Cme04g01960 Cme-Chr4:27216012 Cme06g00410 Cme-Chr6:2629054 2.05E-165 dispersed
Cme06g00410 Cme-Chr6:2629054 Cme12g01634 Cme-Chr12:23484887 0 dispersed
Cme08g00423 Cme-Chr8:2582156 Cme06g00410 Cme-Chr6:2629054 3.62E-144 dispersed
Cme10g00443 Cme-Chr10:2815338 Cme06g00410 Cme-Chr6:2629054 1.52E-167 dispersed
Cme04g00888 Cme-Chr4:11688753 Cme06g00410 Cme-Chr6:2629054 0 transposed
Cme05g00660 Cme-Chr5:7209670 Cme06g00410 Cme-Chr6:2629054 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00410 K01728 - csv:101218188 898.656