Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00428 ATGACAGAAGTGAAGCTCCATGGAACTTGGCCAAGCCCTTTCAGTTACAGAGTCATTTGGGCTTTGGCACTCAAAGGTATTTCCTACGAATACATCGAAGAAGATCTATCCAACAAATCTCCTCTGCTTTTACAATACAATCCCGTTCACAAGAAGATTCCGGTCCTCGTCCATGCCGGAAAACCCATCTCCGAATCCATGATCATTCTCCAGTACATCGACGAGACCTGGCCGGAGAATCCCCTTTTACCCTCCGATCCTCTTCAGAGAGCTGCCGCTCGGTTCTGGATCAAATTCATAGAAGACAAGAGCTTGGTGATTTTGGGAGTAAGTGATATTTTGGAAGGGGAAGAATATAAGGAAAAGGCGAGAAAAGCGAGTTTGGAAGTGTTGAAGACGGTGGAAGAACAAGCACTCGGTGACAAGAAATTCTTCGGCGGCGATGAAATCAACATGGTGGATTTGGCGTACGGGTTCTTGGCACGGTGGCTGCCGGTGGTTGAAGAGGTGGTGGAAGTGAAAATCCTCGAACCAAATACGGTTCCTCGGCTGTATGCTTGGGCGGAGAACTTTCGGCAAGCCGCCGTGATCAGGGACAATCTTCCCGATCACGACGAGATGGTTTCACGGCTGAAGTTCCGGAGGGAGCAGCGATTGCAAATTGGGAGGAAATCATAA 678 48.82 MTEVKLHGTWPSPFSYRVIWALALKGISYEYIEEDLSNKSPLLLQYNPVHKKIPVLVHAGKPISESMIILQYIDETWPENPLLPSDPLQRAAARFWIKFIEDKSLVILGVSDILEGEEYKEKARKASLEVLKTVEEQALGDKKFFGGDEINMVDLAYGFLARWLPVVEEVVEVKILEPNTVPRLYAWAENFRQAAVIRDNLPDHDEMVSRLKFRREQRLQIGRKS 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2719538 2720993 + MELO3C006353.2.1 Cme06g00428 329577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00428 225 CDD GST_N_Tau 4 77 - -
Cme06g00428 225 Pfam Glutathione S-transferase, N-terminal domain 4 75 IPR004045 -
Cme06g00428 225 PANTHER GLUTATHIONE S-TRANSFERASE 1 216 - -
Cme06g00428 225 SFLD Main (cytGST) 1 218 - -
Cme06g00428 225 SFLD Main.3: Omega- and Tau-like 1 218 IPR045073 -
Cme06g00428 225 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Cme06g00428 225 Gene3D Glutaredoxin 1 82 - -
Cme06g00428 225 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cme06g00428 225 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 211 IPR010987 -
Cme06g00428 225 Pfam Glutathione S-transferase, C-terminal domain 110 191 IPR004046 -
Cme06g00428 225 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 216 IPR045073 -
Cme06g00428 225 Gene3D - 83 221 - -
Cme06g00428 225 CDD GST_C_Tau 87 214 IPR045074 GO:0004364|GO:0006749
Cme06g00428 225 SUPERFAMILY GST C-terminal domain-like 75 216 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00428 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207634 389.037
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00428 Cme-Chr6:2719538 Cme06g00432 Cme-Chr6:2728935 3.22E-96 dispersed
Cme06g00426 Cme-Chr6:2717196 Cme06g00428 Cme-Chr6:2719538 9.93E-100 proximal
Cme06g00428 Cme-Chr6:2719538 Cme06g00429 Cme-Chr6:2722784 6.89E-144 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g826 . . . . . . . . . . . Cma14g01862 . . . Cpe08g00370 Cpe03g01560 Bhi01g00028 . . . . . . . . . . . . . . . . . Lsi05g01794 . . Cme06g00428 . . . . . . . . . Cmo06g01285 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00428 Cme_Chr06 FPKM 1.404382 0.0 6.528468 5.755124 29.532501 24.117935 27.156395 0.0 0.542478 1.48129