Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00430 ATGGATGAAGTGAAGCTCCATGAAAATTGGTTAAGCCTTTCCGCATGCAGAGTCATTTGGGCTCTGTCCCTCAAAGACATACCCTACCAATATGTAGAAGAAGAAGGTATCACCAACAAAACTCCTTTCCTTCCTTATTCTAACTCCCTTCACCATAAGGTCTCCCTCATCGTCCACGGAAAATCGATATCCGACTCCTCTGTTATTCTCGAATACATTGACGAGACGTGGCCGCAAAACCCCTTACTCCCTCCCGATCTCCTCGACAAAGCTACGGCTCGGTTTTGGATTCGGTTCATTGATGATAAGGGGGCGGCTATATCGAGAATGTTCTACCCGGGCGGGAAGGAACAAGGGGCGAAGGAGGAAAGCTTAGAGATGCTGCGAATCTTAGAAGAGGAAGTGATCGGCGAGGGAAAATTCTTCGGCGGAGAGAAGATGGGGATAGTGGACTTGGCATTCGGACAATTTGTAGAGTGGTTGGGAGTGTTTGAAGAAGTAACCGGAGAGAAATTGTTGGAATCGGGCTCATTTCCTCGGCTAGAAGCTTGGAGCAGAGCTTTCATGGCAGTTCCGGCGATCAGAGAGAATCGCACGGATCGAAATCGGATGGTGGAGAATATCAAACGTTTTAGGGTTCCAAAAACCCAACATCGTTCTTCGTTGGATCCATCCAATGATATGAAGAACGTTGTTGGGTGTTTGGAGCTCTTTGTATGTTTTTGTGAACTCGTTTCTACCGTTGCCAGGTTTTTCTAA 759 47.04 MDEVKLHENWLSLSACRVIWALSLKDIPYQYVEEEGITNKTPFLPYSNSLHHKVSLIVHGKSISDSSVILEYIDETWPQNPLLPPDLLDKATARFWIRFIDDKGAAISRMFYPGGKEQGAKEESLEMLRILEEEVIGEGKFFGGEKMGIVDLAFGQFVEWLGVFEEVTGEKLLESGSFPRLEAWSRAFMAVPAIRENRTDRNRMVENIKRFRVPKTQHRSSLDPSNDMKNVVGCLELFVCFCELVSTVARFF 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2724580 2725507 + MELO3C006354.2.1 Cme06g00430 329579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00430 252 SUPERFAMILY GST C-terminal domain-like 75 211 IPR036282 -
Cme06g00430 252 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cme06g00430 252 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 211 IPR010987 -
Cme06g00430 252 CDD GST_C_Tau 89 211 IPR045074 GO:0004364|GO:0006749
Cme06g00430 252 Gene3D Glutaredoxin 1 85 - -
Cme06g00430 252 Gene3D - 86 216 - -
Cme06g00430 252 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 213 IPR045073 -
Cme06g00430 252 PANTHER GLUTATHIONE S-TRANSFERASE 1 213 - -
Cme06g00430 252 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Cme06g00430 252 Pfam Glutathione S-transferase, N-terminal domain 15 80 IPR004045 -
Cme06g00430 252 SFLD Glutathione Transferase (cytosolic) 1 212 IPR040079 -
Cme06g00430 252 Pfam Glutathione S-transferase, C-terminal domain 120 192 IPR004046 -
Cme06g00430 252 SFLD Main.3: Omega- and Tau-like 1 212 IPR045073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00430 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207882 410.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00430 Cme-Chr6:2724580 Cme06g00432 Cme-Chr6:2728935 2.62E-63 dispersed
Cme06g00429 Cme-Chr6:2722784 Cme06g00430 Cme-Chr6:2724580 1.53E-65 tandem
Cme06g00430 Cme-Chr6:2724580 Cme06g00431 Cme-Chr6:2726324 6.25E-10 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g820 . . . . . . . . . . Cma06g01277 . Car06g01098 Car14g01667 . . Cpe03g01559 . . . . . . . . . . . . . . . . . . Lsi05g01793 . . Cme06g00430 . . . . . . . . . . Cmo14g01906 . . . . . . . . . . . . . Cla05g00390 Cam05g0423 Cec05g0428 Cco05g0429 Clacu05g0419 Cmu05g0401 Cre05g0464 . Csa03g01145 Chy06g00409 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00430 Cme_Chr06 FPKM 132.984329 146.922653 108.98481 99.539146 224.587799 225.117142 239.203735 126.236923 140.97406 130.754745