Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00431 ATGGATGAAGTGAAGCTACATGGGCATTGGTCGAGTCCTTTCGTTTATAGAGTTATATGGGCTTTGAGAATCAAAGCTATTTCCTACCAATATGTTGAAGAAGATATCCACAACAAAAGTCCTTTGCTTCTTCACTACAATCCTATCTACAAGAAGGTTCCTGTTTTCGTTCATGGCGGAAGATCTATCTGTGAGTCTACTGTTATCCTTGAATACATCGATGAGACATGGCCACAAAACCCTTTACTTCCTGTCGATCCACTCGATCGAGCTACCGCACGATTTTGGATTCAAGTCGTTGAGGATATGGGACTAAGCACATGGAGAATGTTTTGTTCGAGTGGAGAGGAACGAGAAAAGGAGAAGCGAAAGAGCTTGGAGATGCTGCAAATTGTAGAAGAGAAAGCTATTGATGACAGAAAATTCTTTGGTGGAGAGAAGATCGGGATGGTAGATTTGGTGTATGGAGTATTTGGATATTGGTTAGGAGTGATTGAAGATCTAATTGGCCAGAAATTGATCGAAACACCTTCCTTTCCTCGACTGCATGCTCGAATAAAAAATTTCTTGGAAGATCCAATAATTCGAGAGAATTGTCCTGATCGAGATAAGATGGATGGAAGAAGAAGTGAAGGTCCACAGAAATTCCACAGAGTGATTTGGGCTCTACAACTCAAACGCATTCCCTACCAGTTCATTGAAGAGGATTTGACCAACAACAGCATTTTGCTCCTACGTTACAATCCCCTCTACAAGAAGATTTCGGGTGCTCGTCTATCTACAAATCCGCCGTCATCCTCGAGTATATCGACGATGCTTGGCCAAAAAATCCTCTGTTGCCGTCGGAACCTTACGACAGCCACAACTCGTTTCTGGATCAAATTCATTCAGGATAAGAAGCAGGAAGTACTGATATTTAGGAGAATTTTTACCGCGAGAGTGGAAGAGCGAGAGCGAGAGCGAGCAAGGAAAGAGAGTCTGGAAGTGCCGAGGACGATCGAGGAGTGA 1008 43.15 MDEVKLHGHWSSPFVYRVIWALRIKAISYQYVEEDIHNKSPLLLHYNPIYKKVPVFVHGGRSICESTVILEYIDETWPQNPLLPVDPLDRATARFWIQVVEDMGLSTWRMFCSSGEEREKEKRKSLEMLQIVEEKAIDDRKFFGGEKIGMVDLVYGVFGYWLGVIEDLIGQKLIETPSFPRLHARIKNFLEDPIIRENCPDRDKMDGRRSEGPQKFHRVIWALQLKRIPYQFIEEDLTNNSILLLRYNPLYKKISGARLSTNPPSSSSISTMLGQKILCCRRNLTTATTRFWIKFIQDKKQEVLIFRRIFTARVEERERERARKESLEVPRTIEE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2726324 2728342 + MELO3C006355.2.1 Cme06g00431 329580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00431 335 CDD GST_N_Tau 4 77 - -
Cme06g00431 335 CDD GST_C_Tau 87 205 IPR045074 GO:0004364|GO:0006749
Cme06g00431 335 Gene3D Glutaredoxin 1 85 - -
Cme06g00431 335 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 216 335 IPR045073 -
Cme06g00431 335 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 205 IPR045073 -
Cme06g00431 335 Gene3D Glutaredoxin 212 270 - -
Cme06g00431 335 Gene3D - 86 211 - -
Cme06g00431 335 SUPERFAMILY Thioredoxin-like 3 101 IPR036249 -
Cme06g00431 335 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cme06g00431 335 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 214 IPR010987 -
Cme06g00431 335 Pfam Glutathione S-transferase, N-terminal domain 4 75 IPR004045 -
Cme06g00431 335 SUPERFAMILY GST C-terminal domain-like 75 205 IPR036282 -
Cme06g00431 335 SFLD Glutathione Transferase (cytosolic) 1 205 IPR040079 -
Cme06g00431 335 SFLD Main.3: Omega- and Tau-like 1 205 IPR045073 -
Cme06g00431 335 PANTHER GLUTATHIONE S-TRANSFERASE 216 335 - -
Cme06g00431 335 PANTHER GLUTATHIONE S-TRANSFERASE 1 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00431 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - pvy:116142227 281.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00292 Cme-Chr6:1776272 Cme06g00431 Cme-Chr6:2726324 5.47E-45 dispersed
Cme06g00431 Cme-Chr6:2726324 Cme06g00291 Cme-Chr6:1771246 4.42E-12 dispersed
Cme06g00430 Cme-Chr6:2724580 Cme06g00431 Cme-Chr6:2726324 6.25E-10 tandem
Cme06g00431 Cme-Chr6:2726324 Cme06g00432 Cme-Chr6:2728935 5.29E-22 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g816 Blo01g00311 . . Bda08g00016 . . . Bma05g01266 . . . Cma14g01861 . . . Cpe08g00369 Cpe03g01558 Bhi01g00030 . . . . . . . . . . . . . . . . . Lsi05g01792 . . Cme06g00431 . . . . . . . . . Cmo06g01286 Cmo14g01905 . . . . . . . . . . . . . . . . . . . . . Csa03g01146 Chy06g00410 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00431 Cme_Chr06 FPKM 0.0 0.0 0.510505 0.54988 16.909351 16.25807 16.721998 0.0 0.0 0.0