Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00438 ATGGATTCAGGGTTCTGCGCCGCCCATCTCTCTCAGCTTCTCGGTCCCAACACCACCAACGCCACCGCCGCCGCTAATTTCATTTGCGACCAATTCACTACCGTCACCAACAACTTTTCCGACACCAGAAATGCCCTCGATAACACCTACCTCCTCTTCTCCGCCTACCTCGTATTCTCTATGCAACTCGGCTTCGCCATGCTCTGTGCCGGCTCTGTCCGTGCCAAAAACACCATGAACATCATGCTTACTAATGTCCTCGATGCCGCTGCGGGGGGCCTCTTCTATTACCTTTTCGGATACGCCTTCGCATTCGGCTCCCCTTCTGGTGGCTTCATTGGTCGCCATAACTTTGGCCTTACCTCATTTCCGACCTCCACTGCTGATTACAGTGTTTTCCTTTACCAGTGGGCTTTTGCGATCGCTGCCGCTGGGATTACCAGTGGATCTATCGCTGAGCGGACTCAGTTTGTTGCATATTTGATTTATTCATCTGTTTTGACTGGATTTGTTTATCCGGTGGTTTCTCATTGGTTTTGGTCGCCCGATGGTTGGGCTGGGGTTATGAAATCGGATGGTCATTTGTTATTTGGGTCGGGAGTTATCGATTTCGCTGGCTCCGGAGTCGTTCATATGGTTGGGGGAATTGCTGGTCTATGGGGGGCGTTTATCGAAGGGCCGAGAATCGGTCGATTCGATCACAATGGCCGGTCGGTGGCTCTGCGAGGGCACAGCGCTTCTTTAGTTGTTCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCATTCACGAAGATTCTCGTCCCTTACACCACGGGAAACTTCTACGGCCAATGGAGCGCCGTCGGACGAACAGCAGTAACCACCACACTCGCCGGATGCACGGCGGCACTCACCACGCTTTTCGGGAAGCGATTCCTCTCAGGCCATTGGAACGTGACGGACGTTTGTAACGGACTCCTCGGCGGGTTCGCCGCCATCACTGCCGGCTGTTCCGTCGTCGAACCATGGGCAGCAATCATCTGCGGCTTTGTCGCTGCCGTTGTACTGATATCCTGCAACCGAATCGCGGAGAAGGTGAAATACGACGATCCATTAGAAGCCGCTCAACTCCACGGTGGGTGTGGTGCGTGGGGAGTGATTTTCACGGCACTCTTTGCAACTGAGGAGTATGTAACGGAAGTGTACGGCGGATCGGGGCGGCCCTACGGACTGCTGATGGGTGGCGGCGGAAGATTATTGGCCGCACATTTGATACAGATATTGGTGATTGTAGGATGGGTGAGTGCAACGATGGGGCCATTGTTCTATGTTCTTCATAAGTTGAAGCTTCTTAGAATCTCAACCGAAGATGAAATGGCGGGCATGGATCTAACCCGCCATGGAGGATTTGCTTACATATATCACGATGAAGATGAAGCCCAAAAAATGGGGATTCAGTTGAACAGAGTGGAACCAAAATCTTCAACCCCTACCGGTGATTATTGA 1503 52.3 MDSGFCAAHLSQLLGPNTTNATAAANFICDQFTTVTNNFSDTRNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSGGFIGRHNFGLTSFPTSTADYSVFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGVMKSDGHLLFGSGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDHNGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAAVVLISCNRIAEKVKYDDPLEAAQLHGGCGAWGVIFTALFATEEYVTEVYGGSGRPYGLLMGGGGRLLAAHLIQILVIVGWVSATMGPLFYVLHKLKLLRISTEDEMAGMDLTRHGGFAYIYHDEDEAQKMGIQLNRVEPKSSTPTGDY 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2781414 2782916 - MELO3C006363.2.1 Cme06g00438 329587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00438 500 PANTHER AMMONIUM TRANSPORTER 6 494 - -
Cme06g00438 500 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 6 494 - -
Cme06g00438 500 Gene3D Ammonium transporter AmtB like domains 25 490 IPR029020 -
Cme06g00438 500 TIGRFAM amt: ammonium transporter 47 471 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cme06g00438 500 SUPERFAMILY Ammonium transporter 44 452 - -
Cme06g00438 500 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cme06g00438 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00647 Cme-Chr5:6930540 Cme06g00438 Cme-Chr6:2781414 0 dispersed
Cme05g01064 Cme-Chr5:16264206 Cme06g00438 Cme-Chr6:2781414 0 dispersed
Cme05g01065 Cme-Chr5:16335202 Cme06g00438 Cme-Chr6:2781414 0 dispersed
Cme06g00438 Cme-Chr6:2781414 Cme08g00972 Cme-Chr8:6390240 3.52E-14 dispersed
Cme10g01469 Cme-Chr10:18185075 Cme06g00438 Cme-Chr6:2781414 1.56E-16 transposed
Cme04g00939 Cme-Chr4:12629376 Cme06g00438 Cme-Chr6:2781414 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00438 K03320 - csv:101208366 929.087