Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00439 ATGGGAATTACGAGATTATTATCAACATCAACCTCACGGGGATGGTTCAAATTCCGGGCTCCAATTCACACTCACACAACGCTATCCCCCAGATTCCATCTTCCCCACCGTTCATTTCCCATGCTTAATTCCTCCTCCGCCGTCTCCGCCTCCCGCCGCCGTCTCCGGGGAGTCGTCTTCGACATGGACGGAACCCTAACTGTACCTGTCATCGATTTCGCCGCTATGTATCAATCGGTGCTTGGCGATGAGGAGTATGTCAGAATTAAAGCTCTCAATCCATCCGGCATCGATATTTTGCACATTATTCAGAGCTGGGCTCCTGAGAAGCAGCGGAGGGCGTATGAGGTAATCGCCGATTTTGAGCGTCAGGGGATTGATCGCCTCCAAATTATGCCCGGTGCTGCTGAGCTTTGTACCTTTCTTGATTCCAAGAATATAAGGAGGGGACTAATTACTCGCAATGTAAAGGAAGCTGTTGATATTTTTCACGAGCGTTTTGGTTGGACATTTCAACCAGCCTTAAGCAGGGAATTTGGTTCTTATAAACCTAATCCGGCTCCCCTACTTCATATCTGCTCTTCTTGGGATGTCCTCCCTAATGAAGTAATCATGATCGGCGACAGCCTCCGAGATGATGTTGGATGTGGCAAGGGAGCCGGAGCTTTCACTTGTTTGCTAGATCAAACAGGAAGGTACAACTCGGAGCATTTCACGAAGTTGGATCTCGAGCCAGATTTTAAAGTATCGGCACTCGGTGAAGTTCTACATCTTTTGGATGCAAATTTTGACTTGACCGCATGA 804 48.01 MGITRLLSTSTSRGWFKFRAPIHTHTTLSPRFHLPHRSFPMLNSSSAVSASRRRLRGVVFDMDGTLTVPVIDFAAMYQSVLGDEEYVRIKALNPSGIDILHIIQSWAPEKQRRAYEVIADFERQGIDRLQIMPGAAELCTFLDSKNIRRGLITRNVKEAVDIFHERFGWTFQPALSREFGSYKPNPAPLLHICSSWDVLPNEVIMIGDSLRDDVGCGKGAGAFTCLLDQTGRYNSEHFTKLDLEPDFKVSALGEVLHLLDANFDLTA 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2786388 2789438 + MELO3C006364.2.1 Cme06g00439 329588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00439 267 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 56 260 - -
Cme06g00439 267 Gene3D - 58 232 IPR023214 -
Cme06g00439 267 PANTHER OS02G0816100 PROTEIN 42 260 - -
Cme06g00439 267 SFLD Haloacid Dehalogenase 56 260 - -
Cme06g00439 267 SUPERFAMILY HAD-like 50 260 IPR036412 -
Cme06g00439 267 PANTHER 4-NITROPHENYLPHOSPHATASE-RELATED 42 260 - -
Cme06g00439 267 Gene3D - 68 129 - -
Cme06g00439 267 Pfam Haloacid dehalogenase-like hydrolase 58 224 IPR041492 -
Cme06g00439 267 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 58 221 IPR006439 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00439 - - - csv:101221968 497.664
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g807 . . . Bda08g00010 . . . Bma05g01261 . . Cma06g01286 Cma14g01854 Car06g01104 Car14g01661 . Cpe08g00364 Cpe03g01553 . . . . . . . . . . . . . . . . Cone7ag0359 Cone4ag0371 Lsi05g01782 . . Cme06g00439 . . . . Bpe05g01116 . . . . Cmo06g01291 Cmo14g01899 . . . . . . . . . . . . . Cla05g00398 Cam05g0434 Cec05g0440 Cco05g0439 Clacu05g0429 Cmu05g0410 Cre05g0471 . Csa03g01154 Chy06g00418 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006077 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00439 Cme_Chr06 FPKM 84.180016 90.849907 110.556633 106.908302 164.650833 163.274033 160.386887 160.598053 161.796371 150.402771