Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00446 ATGTTGCACTCCACAGCTTCGTTTTCCATTTACACTGATGATGAAAATCAAGAACAAATCATGGGGTTAGAAGCATTTGAGAAGGGTGTTATGATTGAAGTGAACAAAGAAGAAGTTCTGGGTAGTACTGGAAATGATTTCAGTTTTTCTAAAAGGGCTATGGGGTTGATTCAAGAGGAAGAAATGGAAGATGAAGATGGTCTCAACCGGGGTTTTGACGACAGTGAGGTTAACCTTAGACCCGCAAGTCCTCCGCTCTATTTAGCGGCAGGTCTTGGAATGGATGCATCTGGTCTTGGCGGTGGGTATGATTCTGTTGATTTCTTTGACGAGAAGATGGTGGATGAGACGCCCTCAATCCATCCTTCGTTGCCTCTTAGGGACTATGTGCAGTCTTTATGGTCCGAGGGAAAACTTGATGAAGCTGAGGAACAGAGCTATCAAGCTACAATAACATATCCTGAAGATGGTGAAATTCTCGTGCTATATGCTCAGTTGGTTTGGGAACTCCATCACGATCAAGCTAAAGCTTCAAGTTACTTTGAACGTGCAGCTCTTGTTGCTCCAAATAACAGCGATATTCTTGCAGCACGAGCTAAATTCCTGTGGGAACTGAATGAGGAGGATGAAACTATGGTGCTTCACTCTTCCTTGCATGGTCTCTTTGCATTTTCAGAGCTAATACGTATAATTGGCCCCTCATGTCCTGTTCATCTGCAGATACCAGGTGAAGAAGACAGCAACAAGGTTAATAGTTCATCCCCTGAAGAAAGAATTGAACCGGCATCTGACACTGGTGAGAGTGATATGCAGGAGTATTATGAGAAGATGCTCAAGGAGAACCCCACCGATCCATTGCTTCTGAAAAACTACGCACGGTTCTTGAAACAGTCCAAAGTAGACCTCCAAGGAGCAGAGGAATACTACTACCGTGGCATCCAAGCAGACCCAAGCGATGGGGAGTTGCTATCAGAATATGCAAAACTGGTGTGGGAGCTTCATCATGACTACAATAAAGCATTAAATAACTTCGAGAGAGCAGTTGAAGCCTCTCCTACAAACAGCTATGTTCTTGGAGCTTATGCAAGCTTTCTTTGGGAGACGGACGAATACGAGGAAGATGGGGCAAGCAAAAATGACTCTCAATGGCCTTCAAACACAGTGACAGTTTCTGTAGGAAATGCTTGA 1188 44.19 MLHSTASFSIYTDDENQEQIMGLEAFEKGVMIEVNKEEVLGSTGNDFSFSKRAMGLIQEEEMEDEDGLNRGFDDSEVNLRPASPPLYLAAGLGMDASGLGGGYDSVDFFDEKMVDETPSIHPSLPLRDYVQSLWSEGKLDEAEEQSYQATITYPEDGEILVLYAQLVWELHHDQAKASSYFERAALVAPNNSDILAARAKFLWELNEEDETMVLHSSLHGLFAFSELIRIIGPSCPVHLQIPGEEDSNKVNSSSPEERIEPASDTGESDMQEYYEKMLKENPTDPLLLKNYARFLKQSKVDLQGAEEYYYRGIQADPSDGELLSEYAKLVWELHHDYNKALNNFERAVEASPTNSYVLGAYASFLWETDEYEEDGASKNDSQWPSNTVTVSVGNA 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2847422 2850315 + MELO3C006372.2.1 Cme06g00446 329595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00446 395 MobiDBLite consensus disorder prediction 241 267 - -
Cme06g00446 395 PANTHER N-ACETYLGLUCOSAMINE TRANSFERASE, OGT PROTEIN, PUTATIVE-RELATED 254 374 - -
Cme06g00446 395 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 112 211 - -
Cme06g00446 395 SUPERFAMILY TPR-like 131 210 IPR011990 GO:0005515
Cme06g00446 395 PANTHER N-ACETYLGLUCOSAMINE TRANSFERASE, OGT PROTEIN, PUTATIVE-RELATED 1 109 - -
Cme06g00446 395 Gene3D Tetratricopeptide repeat domain 72 218 IPR011990 GO:0005515
Cme06g00446 395 Gene3D Tetratricopeptide repeat domain 263 376 IPR011990 GO:0005515
Cme06g00446 395 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 254 374 - -
Cme06g00446 395 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 109 - -
Cme06g00446 395 MobiDBLite consensus disorder prediction 378 395 - -
Cme06g00446 395 PANTHER N-ACETYLGLUCOSAMINE TRANSFERASE, OGT PROTEIN, PUTATIVE-RELATED 112 211 - -
Cme06g00446 395 MobiDBLite consensus disorder prediction 375 395 - -
Cme06g00446 395 SUPERFAMILY TPR-like 272 373 IPR011990 GO:0005515
Cme06g00446 395 MobiDBLite consensus disorder prediction 245 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00446 - - - csv:101202732 686.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00132 Cme-Chr4:993054 Cme06g00446 Cme-Chr6:2847422 1.04E-12 dispersed
Cme05g01911 Cme-Chr5:27786964 Cme06g00446 Cme-Chr6:2847422 1.12E-13 dispersed
Cme06g00446 Cme-Chr6:2847422 Cme12g00097 Cme-Chr12:966550 1.36E-14 dispersed
Cme11g02402 Cme-Chr11:30877694 Cme06g00446 Cme-Chr6:2847422 3.53E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g786 . . . . . . . . . . . Cma14g01846 . Car14g01654 . . Cpe03g01546 . . . . . . . . . . . . . . . . Cone7ag0353 . Lsi05g01776 . . Cme06g00446 Blo02g00686 . . . . . . . . . Cmo14g01890 . . . . . . . . . . . . . Cla05g00404 Cam05g0441 Cec05g0448 Cco05g0449 Clacu05g0438 Cmu05g0416 Cre05g0478 . Csa03g01164 Chy06g00426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009424 0 1 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00446 Cme_Chr06 FPKM 7.549568 8.078613 6.841195 6.322489 13.203295 10.206652 13.252051 12.662732 10.781682 12.636017