Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00447 ATGGCCGCTGCCGCAGCCGCCACCGGAGCCTCCTTCTTCACCACTCCCTTAAGGGGTTCACGGTCCAAGCACTGGTTCTCTGATTCTCTCCTCGCAACTCCATCCACCCAAGTTCTGCCCATATTGTCCCGCTCTCTGACCATTGAATCGCCTCCGCTTAGAGCTTCCTCGGAGAGGTGGCGGCCGGTTCTGATCATCTCGGCCGCCGTTGTACAAGGAGAGACGGCTGTGATGGTTGGAGTTGAAGAGGGTGTGGAGGAGGAGACGGCGGTGGAAGGCGGTTCTCCAGTGGAGTCTGGGAGTACTAAGCTGTACTTTGGGAATCTGCCTTACAGTGTTGATAGTTCACAGCTCGCCGCTATCGTTCAGGATCATGGTGTCGCTGAGCTCATTGAGGTTCTGTATGACAGAAATACTGGAAAAAGTAGAGGATTTGCATTTGTAACCATGAGCAGCATTGAAGATTGCAATAAAGTGATTGAAAATCTGGATGGAACTGCTTACATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTGTATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAATTTTGACACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTCATTTATAACGGAGAGACCGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAAATGGAAACAGCTCTTGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTGGGAACATACTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCCGACTATGTTTATCAGTTCTATTCTGATGCCAGTACTATGATCCGGATTGATGGCAATTTCAGAGAGTCCGCCACTGCAATGCTGCAAATACATGCACTTGTTATGTCACTTAGTTATACTGGGATTGAGATCAAGACCGCGCATTCACTAGAATCGTGGAATGGTGGTGTTCTTGTGATGGTTTCTGGCTCTGTTCAATTGAAGAATCTCAATCGAATGAGAAACTTTGTGCAAACTTTTTTTCTTGCACCCCAAGAGAAAGGCTATTTTGTTCTGAATGACATCTTTCACTTTGTTGACGAGGATCCAGTGCACCATTATCCAGCAGTCTTATTAAGTCAGAGCAATTTGGATTCCAAATTAAATGCTCCTACCGCAGTTCCAGAGACAGTGCCCAATTACTCACTTAATGGAGCAGTCCAGGCACGAGAGTTTGCCCCACCAATTGTCAAAGAAAATGGTCATATCGATAACCATAAGTTTGTAGAACAGCAAGTGCAGCAAGTTCCAGAGCCGAAAAACATTATTGAGGAAAATACAGCAGAAGTAAATTCTATGCATCACAACGCATCAACTGTTTCACAAGATCATTTTCCTGTTTCTGTTGAAGAGCATGCTGAGGAGCCCCAAAAGCATACATATGCTTCAATTCTAAGGGTTGCTAAAGGACAAGATGTTCCCGCTCCCGTTGCTGCTCCACAATATCCTGTTAGTAAGGGCACGCCACCTGCTTCCGAGCAAAACTACACTCCACCTCCCACCAGTCAGCATGTACCTTCAGCTTCCCAAAATAACTCTGAAATGGAACAGACAGGAGGAGAGTTCCCTTCGATTGATGATGAAGGTGAAATAAAGTCGGTTTATGTAAGAAACTTGCCATCCACTGTGTCTGCTTCAGAAGTTGAGGAGGAATTCAAGCATTTTGGCAAACTAAGTTCTGATGGGGTGGTTATTAGGAGTCGCAAGGATGTTGGTTTTTGCTATGCGTTTGTCGAATTCGAAGACATTACTGGTGTCCAAAATGCAGTCAAGGCGGGTACTGCCCAGGTTGCTGGGCGTCAAGTATACATCGAGGAGCGGAGAGCAAACAGCAACATCCCGCACCGAGGAGGAAGAAGGGGTAGAGGAAGAGGGAGCTATCACACCGAGTCTTCGAAGGGACACTATAATTCTCGTAGTTACAGTTACAGTATGGGAGTTCGAGATGGAAGCGACCGAGAAAGGGAACGTAAGCCATCAAGTAACAAGAAATGGAGAAATTCCATCAGAGTTGTCATAGCTCGTTTAGCCAAGCAATTTTTTTGGTCCTAG 2157 45.53 MAAAAAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSERWRPVLIISAAVVQGETAVMVGVEEGVEEETAVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVGTYFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAMLQIHALVMSLSYTGIEIKTAHSLESWNGGVLVMVSGSVQLKNLNRMRNFVQTFFLAPQEKGYFVLNDIFHFVDEDPVHHYPAVLLSQSNLDSKLNAPTAVPETVPNYSLNGAVQAREFAPPIVKENGHIDNHKFVEQQVQQVPEPKNIIEENTAEVNSMHHNASTVSQDHFPVSVEEHAEEPQKHTYASILRVAKGQDVPAPVAAPQYPVSKGTPPASEQNYTPPPTSQHVPSASQNNSEMEQTGGEFPSIDDEGEIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRKDVGFCYAFVEFEDITGVQNAVKAGTAQVAGRQVYIEERRANSNIPHRGGRRGRGRGSYHTESSKGHYNSRSYSYSMGVRDGSDRERERKPSSNKKWRNSIRVVIARLAKQFFWS 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2850612 2858505 - MELO3C006373.2.1 Cme06g00447 329596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00447 718 MobiDBLite consensus disorder prediction 665 680 - -
Cme06g00447 718 Gene3D - 79 182 IPR012677 -
Cme06g00447 718 Gene3D - 183 262 IPR012677 -
Cme06g00447 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Cme06g00447 718 Pfam Nuclear transport factor 2 (NTF2) domain 266 380 IPR002075 -
Cme06g00447 718 PANTHER OS02G0131700 PROTEIN 266 692 - -
Cme06g00447 718 ProSiteProfiles Nuclear transport factor 2 domain profile. 266 380 IPR018222 -
Cme06g00447 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 569 636 IPR000504 GO:0003723
Cme06g00447 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 173 IPR000504 GO:0003723
Cme06g00447 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 265 IPR000504 GO:0003723
Cme06g00447 718 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 266 692 IPR039539 -
Cme06g00447 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 567 644 IPR000504 GO:0003723
Cme06g00447 718 CDD RRM_SF 569 640 - -
Cme06g00447 718 SUPERFAMILY RNA-binding domain, RBD 565 672 IPR035979 GO:0003676
Cme06g00447 718 SUPERFAMILY RNA-binding domain, RBD 97 184 IPR035979 GO:0003676
Cme06g00447 718 MobiDBLite consensus disorder prediction 522 554 - -
Cme06g00447 718 MobiDBLite consensus disorder prediction 683 698 - -
Cme06g00447 718 Gene3D - 537 698 IPR012677 -
Cme06g00447 718 Gene3D - 263 384 - -
Cme06g00447 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 266 IPR000504 GO:0003723
Cme06g00447 718 MobiDBLite consensus disorder prediction 511 561 - -
Cme06g00447 718 SUPERFAMILY NTF2-like 263 381 IPR032710 -
Cme06g00447 718 MobiDBLite consensus disorder prediction 644 698 - -
Cme06g00447 718 SMART rrm1_1 103 176 IPR000504 GO:0003723
Cme06g00447 718 SMART rrm1_1 194 267 IPR000504 GO:0003723
Cme06g00447 718 SMART rrm1_1 568 640 IPR000504 GO:0003723
Cme06g00447 718 SUPERFAMILY RNA-binding domain, RBD 187 268 IPR035979 GO:0003676
Cme06g00447 718 CDD NTF2 266 382 IPR018222 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00447 - - - cpep:111790085 1152.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02498 Cme-Chr1:33018621 Cme06g00447 Cme-Chr6:2850612 4.27E-41 dispersed
Cme02g01826 Cme-Chr2:25005397 Cme06g00447 Cme-Chr6:2850612 3.36E-50 dispersed
Cme06g00447 Cme-Chr6:2850612 Cme12g01482 Cme-Chr12:22470843 3.21E-10 dispersed
Cme02g02026 Cme-Chr2:26390976 Cme06g00447 Cme-Chr6:2850612 5.49E-16 transposed
Cme04g00257 Cme-Chr4:2044240 Cme06g00447 Cme-Chr6:2850612 3.72E-21 transposed
Cme04g02315 Cme-Chr4:30093170 Cme06g00447 Cme-Chr6:2850612 1.77E-37 transposed
Cme04g02526 Cme-Chr4:31538461 Cme06g00447 Cme-Chr6:2850612 1.26E-09 transposed
Cme06g00866 Cme-Chr6:5932693 Cme06g00447 Cme-Chr6:2850612 8.81E-08 transposed
Cme06g02461 Cme-Chr6:31618092 Cme06g00447 Cme-Chr6:2850612 2.19E-08 transposed
Cme07g01596 Cme-Chr7:21725237 Cme06g00447 Cme-Chr6:2850612 1.01E-06 transposed
Cme10g00870 Cme-Chr10:6066786 Cme06g00447 Cme-Chr6:2850612 4.61E-10 transposed
Cme11g02312 Cme-Chr11:30197270 Cme06g00447 Cme-Chr6:2850612 3.60E-25 transposed
Cme11g02401 Cme-Chr11:30873146 Cme06g00447 Cme-Chr6:2850612 6.92E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g784 . . Bda03g01097 . Bpe04g00983 . Bma04g01022 . . . . Cma14g01844 . . . Cpe08g00361 Cpe03g01544 . . . . . . . . . . . . . . Cone14ag0183 Cone15ag0192 . . Lsi05g01774 . . Cme06g00447 . . . . . . . . . Cmo06g01297 Cmo14g01887 . . . . . . . . . . . . . Cla05g00406 Cam05g0443 Cec05g0451 Cco05g0451 Clacu05g0440 Cmu05g0418 Cre05g0480 . Csa03g01166 Chy06g00428 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007215 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00447 Cme_Chr06 FPKM 16.103531 18.288815 19.430193 19.755516 14.012169 15.37225 15.381182 20.01894 19.57678 19.455009