Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00455 ATCTCTCCATCTCCGCTTCGTCTCGAGCTGCCGGTTGCCGTCCATTGTCTGGGAATATCGTGCTCTGCGGCTGCTGCACTTGTAAACCGTATCTCTCCAGCTAAAATGAACTGCTCCATCTCCGGTGAGATTCCGGAAGAGCCAGTTGTCTCCAGGAATTCTGGATTACTCTTCGAGAAGCGGTTAATCGAGAGACACATTTTGGACTATGGGAAATGCCCTGTTACAGGCGAACCACTTTCCATCGATGACATTGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGTATCCCTGGAATGCTTGGAATGTTCCAAAATGAATGGGATGTTTTGGTGCTATCCAATTTTGCATTAGAACAACAGCTGCATACGGCTAGACAGGAGCTTAGTCATGCCTTGTATCAGCACGATGCTGCATGTCGTGTGATTGCAAGACTTAAAAAGGAACGGGATGAGGCTAGGTCCTTGCTTGCTCAGGCAGAGAGGCAGATGCCTTTGTCGTCAACTTCGTTTTCGTCCAATGCTGGTGCTGTCAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCAGGAATATCAGACACTGTTATCTCTGAGCTCACAGAATGTAATGCTGCTCTATCACAACAAAGGAAGAGGCGGCAGATACCTGCCACTTTGGTTCCTGTTGAGGCTCTAGAAAATTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAGCAAACCAGGCATTCTGTCTCTTGACATCCATCATGAGAAGGATGTCATTGCGACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTAAGTGGCCACTCAAAGAAGGTAACAAGTGTCAAATTTGTGGGCCGAGATGATTTATTCTTGACTGGTTCAGCTGATAAGACTGTCCGTGTTTGGCAACAATCTGATGATGGGAACTACAATTGTAGGCACATTTTGAAGGATCATACAGCTGAGGTCCAAGCTGTTACCGTCCATGCTACCAATGACTTCTTTGTTACCGCCTCCCTTGATAACACATGGTGTTTTTATGAACTCGCTTCAGGATTATGCCTGACCCAGGTTGCTGAGGATTCAGAAACAGAGGGCTACACATCTGCTGCCTTTCATCCTGATGGTCTCATCCTTGGAACAGGCACGTCAGAAGCCCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAACGTGGCCAAATTCGATGGACATGTTGGGGCAGTAACTGCAATATCTTTTTCTGAAAATGGTTATTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAACTTCCGTACATTTGCACCATATGATTCAGACACTCCAACAAACTCTGTGGACTTTGATCATAGTGGATCTTACCTCGCGATTGCTGGCTCAGACATAAGGGTTTATCAAGTTGCTAGTGTGAAATCTGAATGGAATTGCATCAAAACTCTTCCAGATTTGTCTGGCACAGGGAAAGCAACTTGTCTTAAATTTGGACCGGATGCAAAATACTTAGCCGTCGGGTCAATGGATCGGAATCTTCGAATTTTTGGCGTGCCTGGGGAGGATGGCGCCATGGAGACATGA 1674 45.34 ISPSPLRLELPVAVHCLGISCSAAAALVNRISPAKMNCSISGEIPEEPVVSRNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSFSSNAGAVNVNGKRVNEDEELGPDGKKIRPGISDTVISELTECNAALSQQRKRRQIPATLVPVEALENYTQISSHPLHKTSKPGILSLDIHHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVGRDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATNDFFVTASLDNTWCFYELASGLCLTQVAEDSETEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVAKFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSDTPTNSVDFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTLPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRIFGVPGEDGAMET 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2882080 2890321 - MELO3C006381.2.1 Cme06g00455 329604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00455 557 CDD WD40 259 546 - -
Cme06g00455 557 SMART Ubox_2 35 101 IPR003613 GO:0004842|GO:0016567
Cme06g00455 557 ProSiteProfiles Trp-Asp (WD) repeats profile. 426 466 IPR001680 GO:0005515
Cme06g00455 557 SUPERFAMILY RING/U-box 36 88 - -
Cme06g00455 557 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 327 - -
Cme06g00455 557 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Cme06g00455 557 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 384 419 - -
Cme06g00455 557 SUPERFAMILY WD40 repeat-like 256 546 IPR036322 GO:0005515
Cme06g00455 557 Pfam Prp19/Pso4-like 99 164 IPR013915 -
Cme06g00455 557 Pfam WD domain, G-beta repeat 290 326 IPR001680 GO:0005515
Cme06g00455 557 Pfam WD domain, G-beta repeat 421 457 IPR001680 GO:0005515
Cme06g00455 557 Pfam WD domain, G-beta repeat 508 546 IPR001680 GO:0005515
Cme06g00455 557 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 426 459 - -
Cme06g00455 557 Coils Coil 148 168 - -
Cme06g00455 557 CDD RING-Ubox_PRP19 38 89 - -
Cme06g00455 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 95 IPR013083 -
Cme06g00455 557 Gene3D - 234 548 IPR015943 GO:0005515
Cme06g00455 557 SMART WD40_4 419 457 IPR001680 GO:0005515
Cme06g00455 557 SMART WD40_4 333 372 IPR001680 GO:0005515
Cme06g00455 557 SMART WD40_4 288 327 IPR001680 GO:0005515
Cme06g00455 557 SMART WD40_4 460 499 IPR001680 GO:0005515
Cme06g00455 557 SMART WD40_4 243 285 IPR001680 GO:0005515
Cme06g00455 557 SMART WD40_4 506 547 IPR001680 GO:0005515
Cme06g00455 557 SMART WD40_4 375 416 IPR001680 GO:0005515
Cme06g00455 557 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 425 IPR001680 GO:0005515
Cme06g00455 557 PANTHER PRE-MRNA-PROCESSING FACTOR 19 22 556 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Cme06g00455 557 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 327 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00455 Cme-Chr6:2882080 Cme10g01609 Cme-Chr10:21336689 2.71E-29 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00455 K10599 - csv:101204424 1038.48