Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00469 ATGGAAGAGAGTAGCAGAGCCACCGTAATCCGCCAGCTGCACAACGCGAAGTGCTCATCGGGAAAATCTTACAACCAGATAGCACAAGAGACTGGCCTCACTAACGTCTATGTCGCTCAACTTCTCCGCCGGCAAGCCCAGCTTAAGCCTGATACTGTCCCTAAGTTGAGGTCCGCCTTGCCTCAACTCACCGATGATCATATTCAACAGATGATGCGGCCGCCAATGAGGTCTTACGATCCTTGTTTGATTCAAGAACCCACAGTTTACAGAACTTTAACGTTTGCAACCATAGACTTCTACTGCTCAGTTGACAAGGTCCAGGGTGTTGATGGGAAGGATCGTGTCGTGATTACATTCGATGGTAAATATTTGCCCTACACTGAGCAGTTTTTGCCTACAAATTGTATCAAACAAGCCATGAGAGGTATTAGAAGGACGGAGAATGTAGCCTTCGTCCCCGGTCTTGTGTTATCAACAGGAAAAAGATTTTCTCATTCCTTAGCCGGCCCAATAAAAAGCAATGGAACTCCTCACAAGGAGACGGAGCCTTCATCTATTAAAACCCTCGAAACCCCTTACCTTCATCCACATTTTACTTTGATTAACCCTTTCTCTCTCTCGCCGGCTATGGGGTTATCCCTTCTACGAGCTATGGCGTCTGCCTCCGTCTCCACCTCCGCCGCCCGCCTCTCTGTTCTTCCCAGACGCCTCTTCTCCTCCTCATCTACTCTTACACATCCTCCTTCCCCTTCTTCTTTCACTCTCCGCCGTCGATCTCTCCCTCTGCTTTCCCATGCCGTTCGATCTATCCCTTCCTCCTCCAGGTCCACCTCGTTTCGTTGCCTCTCCTCTAGGCCTGGTAACTCCTCTTACTCTCCTCTTAACTCTAATTCCAACTTCAGTGAACGTCCTCCCACTGAGATGGCGCCTCTTTTCCCTGGATGTGATTACGAGCACTGGCTCATTGTCATGGACAAACCTGGTGGTGAGGGTGCCACTAAGCAGCAGATGATTGATTGCTATATCCAGACTCTTGCTAAAGTTGTTGGCAGTGAAGAGGAAGCAAAGAAGAGGATTTACAATGTTTCTTGCGAGAGGTATTTTGGGTTTGGGTGTGAGTTGGATGAAGAGACCTCCAACAAGCTCGAAGGATTGCCAGGTGTTCTGTTTGTTCTTCCTGATTCTTATGTCGACCCAGAGTATAAAGACTATGGGGCTGAGTTGTTGGTGAATGGAGAGATTGTTCAAAGGTCACCAGAGAGACAGAGAAGAGTGCAGCCACAGCCTCAGAGAGCTAATGATAGACCAAAATATACCGACAGGACCCGCTATGTGCGACGCAGAGAGAATATGACTTGA 1362 48.46 MEESSRATVIRQLHNAKCSSGKSYNQIAQETGLTNVYVAQLLRRQAQLKPDTVPKLRSALPQLTDDHIQQMMRPPMRSYDPCLIQEPTVYRTLTFATIDFYCSVDKVQGVDGKDRVVITFDGKYLPYTEQFLPTNCIKQAMRGIRRTENVAFVPGLVLSTGKRFSHSLAGPIKSNGTPHKETEPSSIKTLETPYLHPHFTLINPFSLSPAMGLSLLRAMASASVSTSAARLSVLPRRLFSSSSTLTHPPSPSSFTLRRRSLPLLSHAVRSIPSSSRSTSFRCLSSRPGNSSYSPLNSNSNFSERPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELLVNGEIVQRSPERQRRVQPQPQRANDRPKYTDRTRYVRRRENMT 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2958402 2965216 + MELO3C006399.2.1 Cme06g00469 329618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00469 453 MobiDBLite consensus disorder prediction 276 306 - -
Cme06g00469 453 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 219 452 IPR039206 GO:0016554
Cme06g00469 453 SMART Cyanate_lyase_2 78 130 IPR003712 GO:0009439
Cme06g00469 453 Gene3D - 1 82 IPR010982 GO:0003677
Cme06g00469 453 SUPERFAMILY Cyanase C-terminal domain 95 129 IPR036581 GO:0009439
Cme06g00469 453 Gene3D - 94 130 IPR036581 GO:0009439
Cme06g00469 453 Pfam Cyanate lyase C-terminal domain 97 128 IPR003712 GO:0009439
Cme06g00469 453 MobiDBLite consensus disorder prediction 419 439 - -
Cme06g00469 453 MobiDBLite consensus disorder prediction 276 305 - -
Cme06g00469 453 SUPERFAMILY lambda repressor-like DNA-binding domains 6 81 IPR010982 GO:0003677
Cme06g00469 453 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 316 399 IPR037045 -
Cme06g00469 453 PRINTS Cyanase signature 37 54 IPR008076 GO:0008824|GO:0009439
Cme06g00469 453 PRINTS Cyanase signature 17 32 IPR008076 GO:0008824|GO:0009439
Cme06g00469 453 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2 CHLOROPLASTIC 219 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00469 - - - csv:101205637 416.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01162 Cme-Chr3:21105366 Cme06g00469 Cme-Chr6:2958402 2.11E-15 dispersed
Cme06g00469 Cme-Chr6:2958402 Cme07g01340 Cme-Chr7:18843816 9.61E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g751 Blo01g00063 Blo12g00141 Bda03g01090 . Bpe04g00988 . Bma04g01015 Bma05g01248 . . Cma06g01306 Cma14g01830 Car06g01120 . . Cpe08g00349 Cpe03g01533 . . . . . . . . . . . . . . . . . . Lsi05g01752 . . Cme06g00469 . . . . Bpe05g01102 . . . . Cmo06g01313 Cmo14g01871 . . . . . . . . . . . . . Cla05g00425 Cam05g0462 Cec05g0470 Cco05g0471 Clacu05g0459 Cmu05g0438 Cre05g0499 . Csa03g01187 Chy06g00451 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005046 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00469 Cme_Chr06 FPKM 0.352218 0.500278 0.465414 0.748525 0.803034 0.463318 0.534669 7.060907 8.03492 7.137015