Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00471 ATGAATAATCCATATGAGTTTTGGCTCTACTCCGCCCGATTCCACTCGTCCGAGTCTCAGTTTTGGCTGCCATTCGGAGCAACCAAACAAACAAGCATTGCAAATACCGAATTCAATCGAATTCAATTGGCATTCAATTCAATAATGACAGAGGCAGTAGTTGGGTTGTTTAAAGCGTTTTTGCATTTAGTAGCCATGTCTGAATCTAATGTCCTTCCCTTTCATCTCTCTCCATTTTCATTTAATCATTTCAATGGGAAACAGCTTGTCCTCCACTTTCGGGATCAGTTAAGAGTGGACGAAATGGCCCATTCATCAGATTCTTTGGCAACTCGAGATTATTCAGCGAGTGGTTTTTCATCCCGAACTGGTGGCGAGGTGGAACAAAAGGTTGATAATGGGAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGCTATTTGAATTATGAGTGGTTCGAAACAGACTATCAATCCCTCTGGATGCAGTCAATTGACCATGAAGCACGTGCTTTACTTGGAAGGCTGGAGTATCAAAAGGGTAACATAGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATTGCTGCTGTAATTTCCAGGATAAAAGCTTCTTTTTCAACCAGATATGAACAAAATAGGCGCCAATCACAAAGCGATGTTGTGCCTACTATGTCTATGCATGCCATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTGCAAGGTTTAGGAAGATTTGTCGAGGCCGCAAAATCGTGCAAACTAATTTTAGACACTGTCGAATCTTCATTCCCAGAAGGCTTACCTGAAAACTTCGCTAATGATTGTAAATTGCAAGAGACACTAACAAAGGCTGTTGATTTACTTCCAGAATTGTGGAAATCTGCTGGTTCTCCACAAGAATCTATCTTGTCGTATAGGCGTGCGCTTCTCTATCAATGGAATCTAGAAATGGAAGCCAGAGCAAGAATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTGATGCAAGTCCTCCAAATCTTCGTTCACAGATGGATAGCTCGTTCGTGCCAAGAAATAATATGGAAGAGGCCATTCTTTTGTTAATGGATCTGATGAGAAAATATACACTTGGATTGATTGTATGGGATCCGTCAGTAATAGAGCATCTCTCCTTTGCACTTTCTATATCAGGGGAATTTGGAGCTCTAGCCAATGAGGTTGAACAATTGCCTCCTGGAATTATAGGAAGAAAAGAAAAGTACTGTATCCTAGCACTTTGTTACTACGGGGAAGGTAAAAGCTTAGTTGCATTGAATCTTTTGAAGAACTTCTTAAGTAACATAGAGAATGTGGACTGCTTGTTGGAATTGTTGCTGGCTTCTAAGCTCTGTGGAGAAAATTTGGTTTGTCTTGATGAGGGAGTCGCCTACACAATGAGAGTGCTTTCACAGCTGCATGGTAAATGCATCCAATTGGCTTCTGTTGCTAATTGCTTACTTGGTGTGTTATTGTCAGCTACGTCCAAGTTAGTTGCTTCAGATTCTCAGAAAGCTTTGAAGCAATCTGAAGCACTCAAGGCACTACAAACTGCTGAGCAACTGATGAGACAAAGAGATCCATTCATTATTTATCATCTTGGTCTTGAATATGCCGAACAGAGGAAGCTGGATTTTGCTCTATATTATGCAAAACAGCTAGTGAAACTCGAGGCAGGCTCTAGCCTGAAGTCTTATGTATTGTTGGCGAGAATCTTGTCTGCCCAGAAAAGGTTTGTGGATGCGGAGACTGTTCTCAATGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGCGAGCTTTTACGAACTAAAGCTAAGCTCCAGATTGCTCAAGGCCAGTTAAAGAATGGTATAGAAACGTATAGTCATCTTCTTGCTATAATTCAAGTCCAGAACAAAAGTAGTGGAAAGATGCTTCCAAAGGATGTGAGCAAATATGATAGAAGTTTAGAAGTAGATACATGGCATGACTTGGCCGATATTTACACAGGCTTGTCTCAGTGGCGGGATGCTGAGATCTGTCTGTCAAAATTGCAAGCAATCGATCCATATTCTGCTTCCAAATGGCATTCCACAGGTTTGCTCTACGAGTCTAAGGGTCTTCCACGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGCTTGATATCCACTGCCCGTCTTCTCCAACAGCTAGGCGGTAGTCAGTCGTTTCCTGTAGTAAGAAGCTTGCTAACCGATGCCCTTCGACTAGATCGAGCAAATCCATCTGCTTGGTACAGTCTTGGGATGCTATATAAAGCTGACGCTGGGGCATCGGCGTTGGAGGCTGCTGAATGCTTTGAAGCTGCAACTCTCCTTGAAGAGTCGGCTCCAATTGAACCTTTCAGACGATGA 2445 42.09 MNNPYEFWLYSARFHSSESQFWLPFGATKQTSIANTEFNRIQLAFNSIMTEAVVGLFKAFLHLVAMSESNVLPFHLSPFSFNHFNGKQLVLHFRDQLRVDEMAHSSDSLATRDYSASGFSSRTGGEVEQKVDNGNIEEAESSLRESGYLNYEWFETDYQSLWMQSIDHEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASFSTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLILDTVESSFPEGLPENFANDCKLQETLTKAVDLLPELWKSAGSPQESILSYRRALLYQWNLEMEARARIEKEFAIFLLYSGCDASPPNLRSQMDSSFVPRNNMEEAILLLMDLMRKYTLGLIVWDPSVIEHLSFALSISGEFGALANEVEQLPPGIIGRKEKYCILALCYYGEGKSLVALNLLKNFLSNIENVDCLLELLLASKLCGENLVCLDEGVAYTMRVLSQLHGKCIQLASVANCLLGVLLSATSKLVASDSQKALKQSEALKALQTAEQLMRQRDPFIIYHLGLEYAEQRKLDFALYYAKQLVKLEAGSSLKSYVLLARILSAQKRFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYSHLLAIIQVQNKSSGKMLPKDVSKYDRSLEVDTWHDLADIYTGLSQWRDAEICLSKLQAIDPYSASKWHSTGLLYESKGLPRDALQAYNKALDIDPGHVPSLISTARLLQQLGGSQSFPVVRSLLTDALRLDRANPSAWYSLGMLYKADAGASALEAAECFEAATLLEESAPIEPFRR 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2967349 2972935 - MELO3C006401.2.1 Cme06g00471 329620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00471 814 PANTHER PROTEIN NPG1 93 813 IPR043376 -
Cme06g00471 814 SMART tpr_5 667 700 IPR019734 GO:0005515
Cme06g00471 814 SMART tpr_5 613 646 IPR019734 GO:0005515
Cme06g00471 814 SMART tpr_5 577 610 IPR019734 GO:0005515
Cme06g00471 814 SMART tpr_5 235 268 IPR019734 GO:0005515
Cme06g00471 814 SMART tpr_5 701 734 IPR019734 GO:0005515
Cme06g00471 814 SMART tpr_5 542 575 IPR019734 GO:0005515
Cme06g00471 814 Gene3D Tetratricopeptide repeat domain 126 651 IPR011990 GO:0005515
Cme06g00471 814 PANTHER OS10G0471400 PROTEIN 93 813 - -
Cme06g00471 814 Gene3D Tetratricopeptide repeat domain 652 808 IPR011990 GO:0005515
Cme06g00471 814 ProSiteProfiles Leucine-rich repeat profile. 436 457 IPR001611 GO:0005515
Cme06g00471 814 Pfam Tetratricopeptide repeat 548 606 - -
Cme06g00471 814 SUPERFAMILY TPR-like 541 641 IPR011990 GO:0005515
Cme06g00471 814 SUPERFAMILY TPR-like 614 783 IPR011990 GO:0005515
Cme06g00471 814 ProSiteProfiles TPR repeat profile. 701 734 IPR019734 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02105 Cme-Chr3:28338587 Cme06g00471 Cme-Chr6:2967349 0 dispersed
Cme06g00471 Cme-Chr6:2967349 Cme07g00669 Cme-Chr7:5719008 0 dispersed
Cme04g00983 Cme-Chr4:13315816 Cme06g00471 Cme-Chr6:2967349 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00471 K21843 - csv:101206105 1323.15