Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00476 ATGGCTGCTCTAGCGAGCTCCGTTCTTCAGTCTCCACTCCAGATCCGTACTTCCGATTCTTCTTTTGGGTCTCTTTTTTCATCTAGAATACATCGGATTGCACCCAGTTTCAACCTCAAGTGTTCCCGCCGCCAGTCTCTGTTTTCCGGCGACGGGGGATCCAGAAGAAATTTGTCTTTGAAATCGGTTTCAGCCGATGTTTACTCGGACCCTTCGTCGCCTCCCTCTGTTGTTGACGAATACAAGGCTAAGTCTGAGCTCCTTGCGTCCTTGAAGATCAAGCTACTGAGTGCGGTTTCAGGGTTAAACAGAGGTCTTGCTGCTAATGAGGATGATTTACAGAAGGCAGACGAGGCTGCCAAGGAGATTGAAGCTGTCGGGGGGCCTGTGGACCTCTCAGCTGATCTTGACAAATTGCAGGGGAGATGGAAATTGATATACAGCAGTGCATTCTCATCTCGGACTTTAGGCGGTAGTAGACCGGGACCTCCCACGGGAAGGCTACTTCCTATTACTCTTGGTCAGCGAATTGACATCATCAGTAAAGATTTTGATAACATTGTAGAACTCGAACTAGGTGCTCCTTGGCCTCTACCTCCTGCTGAAGTCACTGCTACTTTGGCTCACAAGTTTGAAATCATAGGGTCTGCTAAGATTAAGATTACTTTTGAGAAAACGACCGTGAAAACAACTGGGAACTTGTCACAGCTTCCACCATTAGAGGTACCTCGGATTCCAGATGCCTTGAGGCCTCCGTCTAACACCGGAAGTGGTGACTTTGAAGTCACTTACCTTGACAACGATACCCGAATCACCAGAGGAGATAGAGGAGAACTCAGGGTGTTTGTTATCTCATAA 858 47.9 MAALASSVLQSPLQIRTSDSSFGSLFSSRIHRIAPSFNLKCSRRQSLFSGDGGSRRNLSLKSVSADVYSDPSSPPSVVDEYKAKSELLASLKIKLLSAVSGLNRGLAANEDDLQKADEAAKEIEAVGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQRIDIISKDFDNIVELELGAPWPLPPAEVTATLAHKFEIIGSAKIKITFEKTTVKTTGNLSQLPPLEVPRIPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3017859 3020484 + MELO3C006407.2.1 Cme06g00476 329625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00476 285 PANTHER - 1 285 IPR039633 -
Cme06g00476 285 Pfam PAP_fibrillin 90 282 IPR006843 -
Cme06g00476 285 PANTHER PLASTID-LIPID-ASSOCIATED PROTEIN 6, CHLOROPLASTIC 1 285 - -
Cme06g00476 285 Coils Coil 106 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00476 - - - csv:101206582 466.463
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g736 . . . . . Bpe14g01266 . . . . Cma06g01312 . Car06g01126 . . Cpe08g00343 . Bhi01g00710 . . . Hepe05g1669 . . . . . . . . . . . Cone7ag0334 Cone4ag0341 Lsi05g01746 . . Cme06g00476 Blo02g00754 Blo07g00272 . Bda13g00052 . Bpe13g00548 Bma02g00765 . . Cmo06g01320 . . . . . . . . . . . . . . Cla05g00432 Cam05g0470 Cec05g0479 Cco05g0479 Clacu05g0467 Cmu05g0446 Cre05g0507 . Csa03g01194 Chy06g00458 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009193 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00476 Cme_Chr06 FPKM 0.57478 0.866539 16.54516 14.293126 2.780615 3.322646 4.119995 29.301737 30.525126 31.635252