Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00499 ATGGAATCTGCTACCCTTAATAGAATAATTAATAGGTTGGTTGAAATCGGGACCAGATCGGGGAAGCAGGTGCTGCTTTCTGAGGCTGAAATTACCCAACTATGCATGGCTTCCAGAGAAATTTTCTTAAGGCAACCTAATCTTTTGGAAATTGATGCACCTATCTATATCTGCGGGGATATCCATGGCCAGTTTTCTGATCTTCTAAGACTTCTCGAATTTGGTGGATTTCCTCCTCATTCGAACTACTTGTTCTTGGGGGACTATGTGGATCGAGGAAAGCAGAGCATAGAAACGATCTGCCTCCTCCTTGCATATAAAATAAAGTATCCTGAAAACTTCTTCCTTTTGAGGGGAAACCACGAATGTGCATCTGTAAACCGTATTTATGGTTTTTATGATGAATGTAAACGTAGGTTCAATGTCAAACTGTGGAAAATATTCACGGACTGTTTCAACTGTTTACCTGTGGCTGCTCTAGTTGATGAAAAGATACTGTGTATGCATGGTGGGTTATCTCCTCACCTTGACAGGTTAGATCAGATTAGGAATTTAAAGCGCCCTGCCGATGTTCCAGAATCAGGTTTACTCTGTGATCTTCTTTGGTCTGATCCAAGTGTAAACACACGTGGCTGGGGACCGAATGAACGAGGGGTTTCATACACCTTTGGTGCAGATCGAGTAGCAGAGTTTCTTCGAAAACATGATCTTGATTTGATTTGTAGAGCTCACCAGGTGTGA 741 42.11 MESATLNRIINRLVEIGTRSGKQVLLSEAEITQLCMASREIFLRQPNLLEIDAPIYICGDIHGQFSDLLRLLEFGGFPPHSNYLFLGDYVDRGKQSIETICLLLAYKIKYPENFFLLRGNHECASVNRIYGFYDECKRRFNVKLWKIFTDCFNCLPVAALVDEKILCMHGGLSPHLDRLDQIRNLKRPADVPESGLLCDLLWSDPSVNTRGWGPNERGVSYTFGADRVAEFLRKHDLDLICRAHQV 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3143794 3147073 - MELO3C006429.2.1 Cme06g00499 329648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00499 246 Pfam Serine-threonine protein phosphatase N-terminal domain 6 51 IPR031675 -
Cme06g00499 246 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Cme06g00499 246 Gene3D - 4 246 IPR029052 -
Cme06g00499 246 SMART pp2a_7 26 246 IPR006186 GO:0016787
Cme06g00499 246 SUPERFAMILY Metallo-dependent phosphatases 21 246 IPR029052 -
Cme06g00499 246 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 246 - -
Cme06g00499 246 PRINTS Serine/threonine phosphatase family signature 236 246 IPR006186 GO:0016787
Cme06g00499 246 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Cme06g00499 246 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Cme06g00499 246 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Cme06g00499 246 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Cme06g00499 246 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Cme06g00499 246 Pfam Calcineurin-like phosphoesterase 54 245 IPR004843 GO:0016787
Cme06g00499 246 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00499 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] - csv:101209828 502.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00499 Cme-Chr6:3143794 Cme10g00927 Cme-Chr10:6887819 1.95E-146 dispersed
Cme06g00499 Cme-Chr6:3143794 Cme03g01319 Cme-Chr3:22699989 1.50E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g698 . . . . Bpe04g01007 Bpe14g01248 . . . . Cma06g01329 . Car06g01141 . . Cpe08g00331 . . . . . . . . . . . . . . . . Cone15ag0158 Cone7ag0320 Cone4ag0325 Lsi05g01726 . . Cme06g00499 Blo02g00737 Blo07g00257 Bda11g00627 Bda13g00068 . Bpe13g00561 . . . Cmo06g01333 . . . . . . . . . . . . . . Cla05g00450 Cam05g0491 Cec05g0500 Cco05g0499 Clacu05g0486 Cmu05g0463 Cre05g0526 . Csa03g01216 Chy06g00478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000122 12 6 9 10 10 5 9 5 6 6 6 6 9 6 6 8 6 16 7 6 6 6 6 6 6 6 5 12 7 7 221
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00499 Cme_Chr06 FPKM 11.759523 10.748481 12.397619 14.759831 10.867606 7.62009 10.317776 26.956011 29.326698 27.720671