Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00500 ATGGATTACTCTGTATTCTTCTCCCCGGTTTCCGATTTCTCATCCGAATCATCCTTCGGTTCACCCGAATCCTCCTTCACCAATTTGGATCACAATTTTCTCCCTTTCAATGAAAATGACTCAGAGGAAATGCTTCTTTATGGCCTAATCTCCGAGGGGACATACGAATCCTCCGATACCAGTATCGGAACCGTGCAAGTGAAGGAAGAGGAAGTCGATTCCATCGGAGAAGAAAGCCCAAAGAAAGAGAGGGCTTATAGAGGAGTTCGCCGCCGTCCATGGGGGAAATTTGCGGCGGAGATTAGAGATTCCACTAGACATGGTATAAGGGTATGGTTGGGAACTTTCGATAGTGCCGAAGCCGCCGCTTTGGCTTACGATCAAGCTGCCTTTTCGATGAGGGGTGCTGCCGCAATTCTCAATTTTCCTGTCGACAGAGTTAGAGAGTCTCTCAAAGAGATGAACGGCGGCAGTGGCGGCAGCGGTAATAGTTTAGCCGAAGACGGTGGCTCTCCGGTGGTGGCGTTAAAAAGAAAACACTCAATTAGAAGGAAAGCCATAAGTAAAAAGAGCAAAGAGAGGGATGTGAGGATTCAAAATGTGGTGGTTTTGGAAGATTTAGGGGCAGAGTATTTGGAAGAACTTTTGGGATCTTCTCAAAGTGATAACCCTTCTTGTTCTTTCTAA 687 46.58 MDYSVFFSPVSDFSSESSFGSPESSFTNLDHNFLPFNENDSEEMLLYGLISEGTYESSDTSIGTVQVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNGGSGGSGNSLAEDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNVVVLEDLGAEYLEELLGSSQSDNPSCSF 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3151318 3152332 - MELO3C006430.2.1 Cme06g00500 329649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00500 228 PANTHER DNA-BINDING DOMAIN 27 218 IPR044808 GO:0003700|GO:0009873
Cme06g00500 228 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Cme06g00500 228 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Cme06g00500 228 CDD AP2 86 145 IPR001471 GO:0003700|GO:0006355
Cme06g00500 228 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Cme06g00500 228 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
Cme06g00500 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 27 218 - -
Cme06g00500 228 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Cme06g00500 228 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Cme06g00500 228 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00500 Cme-Chr6:3151318 Cme08g00254 Cme-Chr8:1650699 1.67E-36 dispersed
Cme04g01023 Cme-Chr4:13957162 Cme06g00500 Cme-Chr6:3151318 2.73E-60 wgd
Cme05g00557 Cme-Chr5:5448371 Cme06g00500 Cme-Chr6:3151318 4.12E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41434 PF00847 AP2 2.70E-14 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00500 K14516 - csv:101210326 372.089