Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00504 AAAGAGAGACTTGAGCAGCTTGTTCTCTTCCTCTACAGCCTGCGTGCCAATCTCGAACTACCCACCAAAAGGCAACAACCATTCTTAGCAATACACAATACCACGATCAAGATGAAGATCATGGTCGCCATTAAGCGAGTCGTCGATTACGCCGTCAAAATCCGTGTTAAACCGGACAGAACGGGGGTTGAGACCCAGAACGTCAAAATGTCGATGAACCCCTTTTGCGAGATTGCAATCGAGGAAGCTCTGCGAATCAAGGAGGCTGGCTTGGCCTCTGAGGTTGTAGCAGTCAGCATGGGCCCAGTTCAGTGCGTCGACACTCTCAGGACGGGCCTTGCGATGGGCGCTGACAGGGGCATTCATGTGGAAGCCACTGCACCCCTTTATCCTCTATCTGTTGCTAAGATTTTGAAGGCCCTTGTTGAGGTTGAGAAGCCTGGCCTTCTTTTACTAGGGAAACAGGCTATTGATGATGATTGTAATCAAACGGGGCAGATGGTTGCAGGTCTTCTGAACTGGCCTCAAGGGACTTTTGCTTCGAAGGTTGTGATAGACAAGGAGAAGCAGGAAGTGACAGTAGACAGAGAAGTGGATGGTGGTCTCGAGACTCTTTGTTTGGACTTACCGGCCGTAATCACAACTGATTTGAGACTGAATCAACCGAGGTATGCTACGCTCCCGAACATAATGAAAGCGAAGTCAAAACCCATAAAGAAGTTCACTCCACAGAAATTAAATGTGAATGTGAAGCCTGATTTAGAGGTCGTTGAAGTGACGGAACCTCCGAAAAGAAAAGCGGGTATCTTATTGTCATCTGTTGATGAACTGATTGACAAACTAAAAAATGAAGCCCATGTCATTTGA 867 47.29 KERLEQLVLFLYSLRANLELPTKRQQPFLAIHNTTIKMKIMVAIKRVVDYAVKIRVKPDRTGVETQNVKMSMNPFCEIAIEEALRIKEAGLASEVVAVSMGPVQCVDTLRTGLAMGADRGIHVEATAPLYPLSVAKILKALVEVEKPGLLLLGKQAIDDDCNQTGQMVAGLLNWPQGTFASKVVIDKEKQEVTVDREVDGGLETLCLDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKFTPQKLNVNVKPDLEVVEVTEPPKRKAGILLSSVDELIDKLKNEAHVI 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3183470 3186531 + MELO3C006434.2.1 Cme06g00504 329653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00504 288 PIRSF Beta-ETF 38 288 IPR012255 GO:0009055
Cme06g00504 288 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 38 281 - -
Cme06g00504 288 CDD ETF_beta 39 242 IPR033948 -
Cme06g00504 288 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 38 287 IPR012255 GO:0009055
Cme06g00504 288 SMART ETF_2 60 250 IPR014730 -
Cme06g00504 288 Gene3D HUPs 38 286 IPR014729 -
Cme06g00504 288 ProSitePatterns Electron transfer flavoprotein beta-subunit signature. 194 214 IPR000049 GO:0009055
Cme06g00504 288 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT BETA 38 287 - -
Cme06g00504 288 Pfam Electron transfer flavoprotein domain 63 244 IPR014730 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00504 K03521 fixA, etfB; electron transfer flavoprotein beta subunit - csv:101210570 480.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g673 . . . . . Bpe14g01245 . . . . . Cma14g01807 . Car14g01623 . . . . . . . . . . . . . . . . . . . Cone7ag0315 Cone4ag0320 Lsi05g01720 . . Cme06g00504 Blo02g00735 . . Bda13g00071 . . Bma02g00792 . . . Cmo14g01843 . . . . . . . . . . . . . . . . . . . . . Csa03g01220 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002713 3 0 2 2 2 1 2 1 1 1 1 1 3 2 2 3 1 4 2 1 2 2 2 2 2 2 1 2 2 3 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00504 Cme_Chr06 FPKM 131.549713 133.177155 102.717697 105.356155 76.425758 88.587646 79.359566 80.30233 94.69986 90.601318