Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00505 ATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTCGATTGCTCCTTCTTCCCCGACGCCGACAATCTTATTAACCCTTCACTCGATCCTTTGTGGCCTCCTAATGATTCCAGGAAGGGTTCTTTAGCGGATACTGATGTTTCAGCCGGTCGTGTCGAATCTGAAGAAAATGATTGTTCGAGGAAGAGGACACGAGATGGGTCGTGCGCTGGACCATCTTCAAAAGCTTGTCGTGAGAGGTTGCGGAGGGAGAAATTAAATGATAGGTTTCTAGATTTGAGCATTGCTTTAGAACCTAGTAGACATACCAAAACTAACAAGCCGGCCATACTTGATGATGCCATAAGAGTGTTGAATCAACTTAAGAATGAAGCCGAAGACCTCAAACAAACTAATGAAAAGTTGCGAGAAGAATTGAAGAACTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATAATTCTGAAGGAAGAAAAAGAAAAAATGGAACAACAGTTGAAATCTATAGCCATTCCATCTCCAGGGCTTATCCCTGGTCATCCAGCTACATATCATGCTGCTTCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTTTGATCCCAATGTGGCAATATCTTCCTCCATCAATACGAGATACATCTCAAGATCATGAGCTCAGGCCCCTGCTGCTTAGTTTATTTAATTTTTTCCACCTTTTAAATAACTAG 714 41.6 MDPLEDSSCWDFLDCSFFPDADNLINPSLDPLWPPNDSRKGSLADTDVSAGRVESEENDCSRKRTRDGSCAGPSSKACRERLRREKLNDRFLDLSIALEPSRHTKTNKPAILDDAIRVLNQLKNEAEDLKQTNEKLREELKNLKAEKNDLRKEKIILKEEKEKMEQQLKSIAIPSPGLIPGHPATYHAASGKMAVFPGYGLIPMWQYLPPSIRDTSQDHELRPLLLSLFNFFHLLNN 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3187554 3189903 + MELO3C006435.2.1 Cme06g00505 329654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00505 237 MobiDBLite consensus disorder prediction 50 66 - -
Cme06g00505 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 139 IPR036638 GO:0046983
Cme06g00505 237 CDD bHLH_AtILR3_like 76 151 - -
Cme06g00505 237 MobiDBLite consensus disorder prediction 29 75 - -
Cme06g00505 237 Pfam Helix-loop-helix DNA-binding domain 75 122 IPR011598 GO:0046983
Cme06g00505 237 Gene3D - 74 155 IPR036638 GO:0046983
Cme06g00505 237 PANTHER TRANSCRIPTION FACTOR BHLH104 1 223 - -
Cme06g00505 237 PANTHER BHLH TRANSCRIPTION FACTOR 1 223 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cme06g00505 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 122 IPR011598 GO:0046983
Cme06g00505 237 SMART finulus 77 128 IPR011598 GO:0046983
Cme06g00505 237 Coils Coil 112 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00505 Cme-Chr6:3187554 Cme12g01447 Cme-Chr12:22226137 1.81E-42 dispersed
Cme06g00505 Cme-Chr6:3187554 Cme11g00758 Cme-Chr11:9430545 7.89E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41437 PF00010 HLH 2.00E-07 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00505 - - csv:101210812 408.683