Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00516 ATGGAGGTAAACGCCATTCTAGAAGAGAAACTCAAAAAGATTCGATCGGTGGTAGGCCCCGACTTGCCGGATTCCTTTATTGTGCGGACGTTGTCGAGAAACGGCGGTGACCCTGATGAGGCTATTAAGTACATTCTCGAAAATCCTGGGTTTTTGGCTAGGCCACTGTCTGTTGTACGGACTGTCACTAGCACCGGTGCTCGAGTTTCGACACAGTTCATGCAGGAGGATTCCATGGAGTCGGAGGAGGAAGCGAAACCGACGGTACAAGTGAAGGAGGAACCGGGTTTATGGCTCAAAGATAAAGGCATTGAGAATAGGGGAGTGAGCTTGGATCGTTCAAAGGTCACTGGAACGTCAAAAATGACACTTGATGAGTTTCTTAAACTGCATGTGATGAGCGATGAGGAGTATAGCAAGATCCTTGAGGAAATTCCGGCAGCAGTGGGGGCGGAACCCAGTGCCAAGATTCATGTAAAGGAGGAACCAGTTGAGGCGATTGCGCAATCTGGTGCTGGTACAAATGCGAGGGTAAAAGAAGAACCAGATTTGGAAGTTAAGAACAGAGCATTTGCTAAAAAAGCGAGGTCTGAGACTGAAAATTTTGCAAAGTCGGTTTCAAGCAATTCAAGTGGCATGCAAAGGAATGGAACCTTGTCTAATGATGGGAGGTGCAAGATTGAAGATGGGGATTTCCCTATTGAGTCCGATTGGTTTTTGGTGGGAAGGACGGTGGTCACAGCCATGTCCACCACGAAAGGGAATAAATTAGCAGATAATGAAATTGTTAATTTTGCATTTCCTTCTTCAAGTTCAAGATTCAATGCGCAATGGATTGTTCGCTTCTCAACTAAAAGAAGTGGAGAGATTGGTCGCCTACCAATGGAGTGGGCAAAATGTGTAGTTCCACTTGTCAACTCCCGGAAAGTTAAAATTCTTGGACGATGTATAGCTGCACCAGGAAGCCTTCACATAATGCAAGAGATCTTTCTATATGTTAGCTTTTATATCCATAGTTCAGTATTCTCAGACATTGATACAGTTACATGGAAGTTGGAGGCTACGCACATTGACTCTACAATGTATCCTCTTCTTACCCTTTTCAAATTACTGAAGATCACACCGTACCAGAAGGCTGAATTTACACCAGAAGAACTTGATTCAAGGAAGCGTCTGCTGAAGCTTGAAGATGATCCAGATGAACCAACATCTATGCTACCTATTGTGAAGCGAAGAAAGGGTTCCCAGCAATTTGCAGATCAAAACAAAGATGACCAAACTCTTAATGAATCATCACTGACTAAGCTTGTTGGTGCAGCAGATATGTATAATCTGGATGAAATGGAGCCTCCACGTACACTAACCTGTGATCTTAGGTCTTATCAAAAGCAAGCTCTATTTTGGATGTCTGAGTTGGAGAAGGGGATCGATGTTGAGAAGGCCACGCAAACCCTTCATCCATGCTGGTCAGCCTACCGTGTCTGTGATGAGAGAGCAACCTCAATCTATGTAAACATTTTCTCTGGGGAATCAACTACAAAATTCCCAACTGCAACACAGATGGCAAGAGGAGGAATTCTCGCGGATGCAATGGGGCTTGGAAAGACTGTTATGACAATTGCTCTTATACTTGCGAGGATGGGCAAAGGATGCCCTGATAACCAAAAGTCCACAGTGAATAAGAATGTAATCACAGAGAAAAAGAGTCAGAAATCCAGGACTAAAGCAAGGGGTGGCACCCTTATTGTTTGTCCAATGGCTTTGCTGGGTCAATGGAAGGAGGAACTTGAAATACATTCAGAACCTGAAAGTATTTCCATATTTGTTCATTATGGTGGTGATAGAACCAACAACCCAGAGGTGCTATCAGGATATGATGTTGTATTGACAACGTATGGTGTCCTAACATCGGCCTATAAGAGTGATGGAGAGTTTAGTATTTACCACAGAGTTGATTGGTACAGAGTTGTGTTAGATGAAGCCCATACAATTAAATCATCAAAGACACAAACTGCACAGGCTGCCTTTACACTTAACTCATATTGTCGCTGGTGTCTTACTGGAACCCCCCTCCAGAATAACTTGGAAGACCTTTTCAGCCTGTTGTGCTTCTTGCGAGTGGAACCGTGGTGCAATTGGGCATGGTGGAACAAGTTGATTCAAAGGCCTTATGAAAATGGTGATCCTAGAGGCTTGAGATTGATCAAGGCTATCCTAAGGCCACTTATGTTGAGGAGAACTAAAGATACAAAGGATGCAAACGGAAGGCCTATTCTTGTTCTCCCTCCTACCGATGTTCAAACCGTCACATGTGAACAGTCTGAGGCTGAACATGATTTTTATGATGCACTGTTTAAGAGATCAAAAGTCCAGTTTGACCAGTTTGTAGCACAAGGAAAGGTTCTCCACAACTATGCAAACATCCTCGAGCTCTTGCTTCGACTTAGGCAGTGTTGCAACCACCCATTCCTTGTAATGAGCCGAGGAGATTCACAACAATATGCTAACTTAAACAAGCTTGCAAGAAAGTTCCTTGAATCCAACACTAATTCTACAACAATGGAGCCGACTGCACCGACTCGAGCATATGTCGAAGAGGTTGTTGATTGCATTCGACGAGGGGAAAACACGGAGTGTCCAATATGTATGGAATTTGCTGACGATGCAGTGCTCACCCCATGTGCTCACAGGATGTGTAGGGAATGTCTCCTCTCAAGCTGGAGGACCCCCACATGTGGGCTCTGCCCAATTTGTAGGCAAATGCTGAGGAAAACTGACCTCATAACATGTCCATCAGAAAACCCTTTCCGTGTGGATGTTGAGAAGAACTGGAAGGAGTCTTCAAAAGTATCAAAACTGCTTGAATGCTTGGAGCAGATTAATCAGTCGGGTTCTGGTGAAAAGAGCATTGTTTTTAGTCAGTGGACTACATTTTTTGATCTCTTGGAGATTCCCTTGAAGAGGAAAAGAATTGGATTCTTCAGATTTGATGGGAAGCTGTCGCAGAAACATAGGGAAAGAGTTCTAAAGGAGTTCAGTGAAAGCAAGGAGATAAAGGTGATGCTGATCTCTCTGAAAGCTGGTGGGGTTGGATTGAATCTAACCGCGGCTTCAAATGTCTTCATAATGGATCCATGGTGGAATCCTGCGGTTGAGGAACAAGCAATCATGAGGATACATCGTATTGGTCAGAAGAGGACAGTCCGTGTCAGGAGATTCATTGTCAAGGACACAGTGGAGGAACGCATGCAACAAGTTCAAGCCAGAAAGCAGCGGATGATCTCCGGTGCACTCACTGACGAGGAAGTTCGAACGGCCAGAATTGAAGAACTCAAGATGCTATTTAGATGA 3351 44.23 MEVNAILEEKLKKIRSVVGPDLPDSFIVRTLSRNGGDPDEAIKYILENPGFLARPLSVVRTVTSTGARVSTQFMQEDSMESEEEAKPTVQVKEEPGLWLKDKGIENRGVSLDRSKVTGTSKMTLDEFLKLHVMSDEEYSKILEEIPAAVGAEPSAKIHVKEEPVEAIAQSGAGTNARVKEEPDLEVKNRAFAKKARSETENFAKSVSSNSSGMQRNGTLSNDGRCKIEDGDFPIESDWFLVGRTVVTAMSTTKGNKLADNEIVNFAFPSSSSRFNAQWIVRFSTKRSGEIGRLPMEWAKCVVPLVNSRKVKILGRCIAAPGSLHIMQEIFLYVSFYIHSSVFSDIDTVTWKLEATHIDSTMYPLLTLFKLLKITPYQKAEFTPEELDSRKRLLKLEDDPDEPTSMLPIVKRRKGSQQFADQNKDDQTLNESSLTKLVGAADMYNLDEMEPPRTLTCDLRSYQKQALFWMSELEKGIDVEKATQTLHPCWSAYRVCDERATSIYVNIFSGESTTKFPTATQMARGGILADAMGLGKTVMTIALILARMGKGCPDNQKSTVNKNVITEKKSQKSRTKARGGTLIVCPMALLGQWKEELEIHSEPESISIFVHYGGDRTNNPEVLSGYDVVLTTYGVLTSAYKSDGEFSIYHRVDWYRVVLDEAHTIKSSKTQTAQAAFTLNSYCRWCLTGTPLQNNLEDLFSLLCFLRVEPWCNWAWWNKLIQRPYENGDPRGLRLIKAILRPLMLRRTKDTKDANGRPILVLPPTDVQTVTCEQSEAEHDFYDALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRGDSQQYANLNKLARKFLESNTNSTTMEPTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPICRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFSQWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMISGALTDEEVRTARIEELKMLFR 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3238245 3245240 + MELO3C006446.2.1 Cme06g00516 329665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00516 1116 Gene3D - 512 747 IPR038718 -
Cme06g00516 1116 CDD DEXDc_SHPRH-like 458 746 - -
Cme06g00516 1116 Pfam SNF2-related domain 461 824 IPR000330 GO:0005524|GO:0140658
Cme06g00516 1116 CDD RING-HC 879 918 - -
Cme06g00516 1116 ProSitePatterns Zinc finger RING-type signature. 894 903 IPR017907 -
Cme06g00516 1116 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 949 1111 IPR001650 -
Cme06g00516 1116 Pfam Helicase conserved C-terminal domain 952 1063 IPR001650 -
Cme06g00516 1116 CDD SF2_C_SNF 947 1074 - -
Cme06g00516 1116 MobiDBLite consensus disorder prediction 201 221 - -
Cme06g00516 1116 SMART ultradead3 454 725 IPR014001 -
Cme06g00516 1116 SUPERFAMILY RING/U-box 876 929 - -
Cme06g00516 1116 Gene3D - 762 1116 IPR027417 -
Cme06g00516 1116 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 516 708 IPR014001 -
Cme06g00516 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 872 928 IPR013083 -
Cme06g00516 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 746 IPR027417 -
Cme06g00516 1116 Pfam HIRAN domain 242 333 IPR014905 GO:0003676|GO:0008270|GO:0016818
Cme06g00516 1116 SMART ring_2 879 918 IPR001841 -
Cme06g00516 1116 CDD CUE 20 46 - -
Cme06g00516 1116 SMART HIRAN_2 241 337 IPR014905 GO:0003676|GO:0008270|GO:0016818
Cme06g00516 1116 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 389 1116 - -
Cme06g00516 1116 MobiDBLite consensus disorder prediction 201 224 - -
Cme06g00516 1116 Pfam CUE domain 20 48 IPR003892 GO:0043130
Cme06g00516 1116 ProSiteProfiles Zinc finger RING-type profile. 879 919 IPR001841 -
Cme06g00516 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 758 1107 IPR027417 -
Cme06g00516 1116 Pfam Zinc finger, C3HC4 type (RING finger) 876 924 - -
Cme06g00516 1116 PANTHER DNA REPAIR PROTEIN RAD5B 389 1116 - -
Cme06g00516 1116 SMART helicmild6 980 1063 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00516 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-] - csv:101214691 2117.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00516 Cme-Chr6:3238245 Cme12g00548 Cme-Chr12:9635020 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0310 Cone4ag0312 Lsi05g01699 . . Cme06g00516 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00464 Cam05g0505 Cec05g0518 Cco05g0519 Clacu05g0506 Cmu05g0482 Cre05g0546 . Csa03g01237 Chy06g00490 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g00817 . 98 869 RAD5/RAD16-like Gene Family AT1G05120 59.6 3.5e-268 921.4
Cme08g00321 . 313 1280 RAD5/RAD16-like Gene Family AT1G11100 51.4 9.4e-239 823.9
Cme09g01101 . 227 1003 RAD5/RAD16-like Gene Family AT1G11100 50.8 1.1e-202 704.1
Cme09g01101 . 11 903 RAD5/RAD16-like Gene Family AT1G50410 54.5 1.1e-242 836.6
Cme08g00321 . 437 1169 RAD5/RAD16-like Gene Family AT1G50410 50.4 1.5e-189 660.2
Cme08g00321 . 417 1280 RAD5/RAD16-like Gene Family AT1G61140 58.8 1.5e-263 906.4
Cme09g01101 . 223 1002 RAD5/RAD16-like Gene Family AT1G61140 56.0 7.8e-228 787.7
Cme12g00548 . 1 1068 RAD5/RAD16-like Gene Family AT5G22750 68.6 0.0e+00 1422.1
Cme06g00516 . 236 1115 RAD5/RAD16-like Gene Family AT5G22750 55.3 1.0e-295 1013.1
Cme06g00516 . 226 1116 RAD5/RAD16-like Gene Family AT5G43530 72.3 0.0e+00 1323.9
Cme12g00548 . 128 1067 RAD5/RAD16-like Gene Family AT5G43530 53.0 2.7e-277 952.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014742 0 0 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 1 19
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41438 PF00176 SNF2_N 2.70E-82 CL0023 Cme TR