Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00517 TGGTGGACCACTCAGGTGGGGTTGTCCGGGGTTGATCATCATCATCATCATCACCACCCGGCCGCGATTAATTCACCCATCTTCAAACAAAGCGATGAAAACAGCGGCGGAAGCCGAGAAGATGACGACGACGACAACAATCGCGACGAGCCAAAAGAAGGAGCCGTGGAAGCCGGAACACGGAGGCCAAGAGGGCGTCCACCTGGATCTAAAAACAAACCAAAACCCCCAATCTTTGTCACACGTGATAGTCCCAACGCTCTCCGGAGCTACGTTTTAGAGGTCGCTGCCGGATCCGACGTGGCCGATTCCATCGCTCAATTCGCTCGTAAACGCCAGCGTGGCGTTTGTGTCCTCAGTGCAACCGGCTTAGTCGCTAACGTCACCTTACGTCAGCCCGCCGCTCCCGGTTCCGTAATGCCACTCCAAGGAAGGTTCGAGATTCTTTCGTTAACCGGTGCTTTTTTACCCGGTCCAGCTCCACCTGGCTCAACGGGTCTCACAGTTTACTTGTCCGGCGGTCAGGGCCAGGTCGTCGGTGGGAGCGTGGTTGGATCGCTTGTGGCTGCCGGACCTATTATGGTAATTGCAGCTACTTTTGCTAATGCAACTTATGAAAGGTTGCCTCTTGAAGATCCCGACGAACATGAAGTTGGAAGTGGCTCCGCCTCACACGGTGGTCCTAGAAGTCCTCCGCCGGAAATTAGAGCCACTGGAGGAGGGCAGATGCCAGCTGGGATGCCGGAACCCACTTTGCCCTTGTATAATTTACTGCCAGATATGATTCCCAACGGCGTTCAGCTTGGCCACGACGGGTATGCTTATGTCCGACCGCCGTATTGA 843 55.04 WWTTQVGLSGVDHHHHHHHPAAINSPIFKQSDENSGGSREDDDDDNNRDEPKEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFANATYERLPLEDPDEHEVGSGSASHGGPRSPPPEIRATGGGQMPAGMPEPTLPLYNLLPDMIPNGVQLGHDGYAYVRPPY 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3249890 3250781 + MELO3C006450.2.1 Cme06g00517 329666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00517 280 MobiDBLite consensus disorder prediction 1 83 - -
Cme06g00517 280 PIRSF ESCAROLA 3 279 IPR014476 GO:0003680
Cme06g00517 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 4 275 - -
Cme06g00517 280 CDD DUF296 89 171 IPR005175 -
Cme06g00517 280 ProSiteProfiles PPC domain profile profile. 85 224 IPR005175 -
Cme06g00517 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 201 IPR005175 -
Cme06g00517 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 275 IPR014476 GO:0003680
Cme06g00517 280 MobiDBLite consensus disorder prediction 212 244 - -
Cme06g00517 280 Gene3D - 88 218 - -
Cme06g00517 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00302 Cme-Chr6:1851064 Cme06g00517 Cme-Chr6:3249890 7.15E-64 dispersed
Cme06g00517 Cme-Chr6:3249890 Cme11g02522 Cme-Chr11:31705602 8.97E-69 dispersed
Cme03g00178 Cme-Chr3:2169055 Cme06g00517 Cme-Chr6:3249890 1.39E-55 transposed
Cme10g00915 Cme-Chr10:6686355 Cme06g00517 Cme-Chr6:3249890 5.38E-73 transposed
Cme05g01816 Cme-Chr5:27058920 Cme06g00517 Cme-Chr6:3249890 1.17E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00517 - - csv:101214931 486.493