Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00521 ATGAAACTTTCTCGTCTTAATTCCCTCCGGCGAGTCCAGTCCGGTGAGCTTGTCATGAAGCTCACCGACGACCACGATGATTCCAAACGGCCCCAATTCCCTCTTGATTCCACCTCTTACAAAATCATCGACGAAATTGGTGTCGGTGTCAGCGCCGTCGTGTACAAAGCCATCTGCATTCCTATGAACTCTGTAGTTGTGGCCATTAAAGCCATTGACCTCGATCGATCACGAGCGGATTTCGATGACATCCGAAGAGAAGCCAAAATTCTCTCACTTCTCTCTCACCCCAACATTCTAAATGCTCATTGTTCTTTCACCGTCGATCGTCGTCTTTGGGTCGTCATGCCGTTCATGTCCGCTGGATCTTTACAGTCCATTATTACGTCCTCGTTTCCCGATGGCTTGCCGGAGCCCTGCATTGCCATTGTTCTTCGAGAAATTCTACACGCACTTTCTTACCTCCACGACCAAGGTCATCTCCACCGTGATATTAAAGCCGGCAACATTCTGATAGACTCAAATGGGTCGATCAAGCTTGCTGATTTTGGAGTTTCCACGTCTATTTTCGAGTCGAATTCAAAACAGGGGGTGTCGATTTCTCCATTATCGACGTCTATGATGCTGAAGGAAGTCGCCGGAACGCCGTATTGGATGGCACCGGAGGTGATTCACTCGCACAATGGGTATAGTTTAAAAGCAGATATATGGTCTTTTGGAATCACGGCGTTGGAATTAGCCCATGGACGACCTCCCCTGTCTCATCTCCCTCCTTCCAAATCCCTGCTTCTGAAAATCACGCGGAGGTTTCGATTTTCCGATTACGAAAATCACCATAACAGCAAAAACAAGAACAAATTCTCAAAAGGGTTTAAGGAATTGGTAGCGTCTTGCCTAGATCCGGAGCCATCGAGAAGACCCTGCGCCGAGAAATTGCTCAAACATCCATTCTTCAAAAACAGCAAGGGGCCTGATCTTCTCGTAAAAACTATATTACAAGGATTGCCGAGCGTTGAAGAGCGATTCAAATTGGGAAAATTACAGCGATTGCCATCGATGAAAACCGAGGAAGAAGAGGAAGAAGAATTAGAGAAAGAGATTATAAAACAGAGGAGGATAAGTGGGTGGAATTTCAACGAGGATGGGTTAGAGCTAGACCCAGTTTTTCCAGGGGAAGAATGTTCGATCATGGAGGAGAAGGGTTCAGGGGATTCGAGCGAGTGCTGTTCAGGGCTGTCGGATCTGAGTTCACCAGTGGGGAATGAAAGGGGCGGCGGCGGCGGGGGTGGAGGGGAGGAGGAGGTTGTTGACAGAGAATCAATAGTGGGAGGATTGATGGCGCTGAAAAAGAGTTTAGATGAGCAGAGGAGGGCGGTGGGGAGTTTGATAGAATTGATGGAAGGGGAGAAAGGGGGAGAGATGAGCAGAGAGGAGCAAATGGGGAGATTGATGGAGAAGATGACGAGGGAATTGGAGAATGAGAGGAGGAGGAACTTTGAATTAGAGATGGAGTTGGAATTTCTCAGGCTTCAAATTTCTGCTGCTCATAATAATAACGATGGTGGTGCTTCGGCCACCCTTAACAACTGA 1590 47.67 MKLSRLNSLRRVQSGELVMKLTDDHDDSKRPQFPLDSTSYKIIDEIGVGVSAVVYKAICIPMNSVVVAIKAIDLDRSRADFDDIRREAKILSLLSHPNILNAHCSFTVDRRLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAIVLREILHALSYLHDQGHLHRDIKAGNILIDSNGSIKLADFGVSTSIFESNSKQGVSISPLSTSMMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYENHHNSKNKNKFSKGFKELVASCLDPEPSRRPCAEKLLKHPFFKNSKGPDLLVKTILQGLPSVEERFKLGKLQRLPSMKTEEEEEEELEKEIIKQRRISGWNFNEDGLELDPVFPGEECSIMEEKGSGDSSECCSGLSDLSSPVGNERGGGGGGGGEEEVVDRESIVGGLMALKKSLDEQRRAVGSLIELMEGEKGGEMSREEQMGRLMEKMTRELENERRRNFELEMELEFLRLQISAAHNNNDGGASATLNN 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3294460 3296070 - MELO3C006454.2.1 Cme06g00521 329670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00521 529 Gene3D Transferase(Phosphotransferase) domain 1 122 371 - -
Cme06g00521 529 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00521 529 Coils Coil 477 511 - -
Cme06g00521 529 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00521 529 Coils Coil 353 373 - -
Cme06g00521 529 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
Cme06g00521 529 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Cme06g00521 529 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 24 519 - -
Cme06g00521 529 SMART serkin_6 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00521 529 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Cme06g00521 529 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 24 519 - -
Cme06g00521 529 MobiDBLite consensus disorder prediction 398 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00521 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101215648 931.013
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme05g00538 Cme06g00521 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00521 Cme-Chr6:3294460 Cme05g01657 Cme-Chr5:25692530 1.06E-42 dispersed
Cme04g01751 Cme-Chr4:25101881 Cme06g00521 Cme-Chr6:3294460 1.58E-104 transposed
Cme06g02394 Cme-Chr6:31100278 Cme06g00521 Cme-Chr6:3294460 4.37E-108 transposed
Cme07g00580 Cme-Chr7:4976665 Cme06g00521 Cme-Chr6:3294460 8.55E-62 transposed
Cme09g00387 Cme-Chr9:3475453 Cme06g00521 Cme-Chr6:3294460 7.70E-111 transposed
Cme05g00538 Cme-Chr5:5213001 Cme06g00521 Cme-Chr6:3294460 7.71E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g641 . . . . . . . . . . . Cma14g01789 . Car14g01610 . . Cpe03g01498 . . . . . . . Cla06g00643 Cam06g0688 Cec06g0690 Cco06g0697 Clacu06g0674 Cmu06g0665 Cre06g1433 . . . Cone4ag0304 Lsi05g01693 . Chy05g00345 Cme06g00521 . . . . . . . . . . Cmo14g01826 . . . Car17g00157 . . . . . . . . . Cla05g00470 Cam05g0511 Cec05g0525 Cco05g0526 Clacu05g0512 Cmu05g0488 Cre05g0552 Lsi09g01255 Csa03g01242 Chy06g00495 Cme05g00538
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g00580 . 1 693 MAP Kinase Kinase Kinase Kinase AT1G53165 63.1 1.2e-223 773.1
Cme07g00580 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.9 4.6e-231 797.7
Cme07g00580 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 2.9e-67 253.8
Cme09g00387 . 1 664 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 4.6e-252 867.5
Cme04g01751 . 3 551 MAP Kinase Kinase Kinase Kinase AT5G14720 51.4 1.1e-149 527.3
Cme06g00521 CCT 32 384 MAP Kinase Kinase Kinase Kinase AT5G14720 51.1 5.5e-96 349.0
Cme06g02394 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.8 1.7e-247 852.4
Cme04g01751 . 2 348 MAP Kinase Kinase Kinase Kinase AT4G24100 62.2 4.1e-129 459.1
Cme06g02394 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 65.3 5.4e-248 854.0
Cme04g01751 . 4 362 MAP Kinase Kinase Kinase Kinase AT1G70430 61.8 3.6e-131 465.7
Cme06g02394 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.3 2.4e-119 426.4
Cme04g01751 . 1 570 MAP Kinase Kinase Kinase Kinase AT1G79640 65.0 2.0e-199 692.6
Cme09g00387 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.7e-103 371.7
Cme04g01751 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 9.8e-87 317.8
Cme06g02394 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 1.3e-75 280.8
Cme06g00521 CCT 32 495 MAP Kinase Kinase Kinase Kinase AT4G14480 58.0 3.7e-142 501.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013881 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64936 PF00069 Pkinase 1.20E-59 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00521 Cme_Chr06 FPKM 5.567966 5.096056 2.052232 2.062217 1.494507 1.628626 1.53292 4.946743 5.1195 6.259713