Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00522 ATGGATTCAGAAGCATGGCAAGGTGTGTATGTTAGCCATGTCCGACCACTTCAAACTCTAATAAACAGAGCCCAAATTCTGCTTCACTCCATTGCTCTGCTTCTCTTGATTTTCTACAGACTTTCCTTTTTCTTCCTAAATCAACAATCCAAACAGTACTTCTTTCCATGGCTTTTGGTTTTCACTTCTGAGCTTCTTCTTGCTTTCATTTGGCTACTTGGCCGAGCCTCTCGATGGCGCCCCCAAATTCCCAAACATATCCTACTTCCCCCGGAGAAACTGAGGCCGCAGCTCCCGCCTCCCGCCATAGACGTTTTTATTTGCACTGCCGACCCGGAGAAGGAGCCCACTCTCGAAGTCATGAACACTCTGATTTCGGCCATGACTTTGGACTACCCACCCGATAAACTTCACATTTACTTTTCCGACGACGCTGGCTCTCCGCTCACTCTACATGGGGTCAGAGAAGCGCGACGGTTTTCACGCTGGTGGGTTCCCTTCTGCAGAAAGTATGGAATTACACAGCCATGTCCCCAGGCTTATTTCTCGCCTGCCCGAGAGGATCACCGCCATGATATTTCGAGGGATGATGGATTTATGGAGCAGAAGCTAATTGTGAGAGAAAAATATGAAGAATTTAAGGATGGGATTAGGGATGGAACGAAAAAGTGGGCTGGGGAAGCCGCCATTAGGTCTCGCGTTGATCACCCTGCATTAGTCCAGATAATAAGGTGTAATAATGATGATGAAGGTGAAGTGAAATCAAGAAATGAAATAGAACTACCTCTACTTGTGTACGTATCTCGTGAGAAAAAACCTTCACATCCACACCATTTCAAGGCTGGGGCCCTTAATGTTCTTCTGCGAGTGTCAGGAGCGATGAGCAATTCACCATACATATTAGTGTTGGATTGCGACATGTACTGCAATGACTCAACTTCAGCCCGTCAAGCGATGCACTTTCATCTTCATCCCCATTTCTCCAACTCTCTCTCTTTCGTTCAGTTCCCTCAAAAGTTCTACAATGTCACCAGAAACGACATCTACGACAGCCAACTCAGATCTTTCTTCACGGTGGAATGGTCCGGCATGAACAATCTTCAGGGTCCTATTCTCTCCGGCACATGCTTTTACATCAAGAGGCTTTCCTTGTTCGGAATTTCCCCACATGATAAGGATTCTTCAAAGCATATTCAAGATTTCGAGAAGTTCATCGAATCCATGAAAGAGAATAACAGATCAAGAGATTTTGCAGTGGAAGAGGCTCAACATTTAGCTTCATGCACCTACGAAAATGGAAGTAAATGGGGTCAAAAGGTTGGGTTTCTCTACGATTCATTGGTGGAGGATTTCTTGACAAGTTTGGTTTTACATAGTCAAGGGTGGAAATCGGTGTTTAGCAATCCAGAGAGGCCACAGTTCTTAGGGAGTGGGACTACAAGTCTAAACCAGGTGTTGTTTCAAGGAACAAGATGGAGCTCTGGGTTGTTCGAAGTCGCCCTTTCGAGATTTTGCCCTCTGTTTTACGGGGGTCAAAGATCGATGATGAGTCTGTTGCAGAGAATGTGCTATGCTGAACTTGCCTTTTATCCTCTTTGTTCATTCTCCATATGGATCTTAGCTACCATCCCTCCCCTCTGTTTGCTCCATGGGATACCTATTTTCCCCGAGGTTTCAAGTCCCTTCTTCGTAGTATATTGCTTCATCTTCATCTCAGCATCATTCTTTCACTTGCACGAGGTTCTAATTTCCGGAGGCTCAGTTAAAAAATGGCTAAACGAACAGAGGATATGGATGATGAAGGGAATCACAGCTCGTTCCTATGGAAGTTTAGATGTTTTGATGGACAAAATTGGGGTAAGAAATGTTAGCTTTGTTCCAACAAACAAAGGGATAGATGATGACCAAATGAAGAGGTACGATATGGACGTGTATGATTTTCAAGCTTCAATCCTATTTCTTGCTCCAATGGTGGGCCTCGTCGTCTTGAATCTCGTTGCCTTCGCAATTGGATTCGGGAGAATTGTAGGGAGTCTTGAAGATTGGGAGGAAACATTTGGGCAGCTTTTTCTTTGCTTCTATACATTGTTGATGAGTTTCCCTATCATTGAGGCCATGGTTTTAAGAACTGATAAAGCCTGCATTCCATTTAAAGTCACTTTAGGATCCTCATTGGTTGTGTTGCTATTTTTGTATTTTCTGTCTATTTTGTTTGTGTAA 2220 44.05 MDSEAWQGVYVSHVRPLQTLINRAQILLHSIALLLLIFYRLSFFFLNQQSKQYFFPWLLVFTSELLLAFIWLLGRASRWRPQIPKHILLPPEKLRPQLPPPAIDVFICTADPEKEPTLEVMNTLISAMTLDYPPDKLHIYFSDDAGSPLTLHGVREARRFSRWWVPFCRKYGITQPCPQAYFSPAREDHRHDISRDDGFMEQKLIVREKYEEFKDGIRDGTKKWAGEAAIRSRVDHPALVQIIRCNNDDEGEVKSRNEIELPLLVYVSREKKPSHPHHFKAGALNVLLRVSGAMSNSPYILVLDCDMYCNDSTSARQAMHFHLHPHFSNSLSFVQFPQKFYNVTRNDIYDSQLRSFFTVEWSGMNNLQGPILSGTCFYIKRLSLFGISPHDKDSSKHIQDFEKFIESMKENNRSRDFAVEEAQHLASCTYENGSKWGQKVGFLYDSLVEDFLTSLVLHSQGWKSVFSNPERPQFLGSGTTSLNQVLFQGTRWSSGLFEVALSRFCPLFYGGQRSMMSLLQRMCYAELAFYPLCSFSIWILATIPPLCLLHGIPIFPEVSSPFFVVYCFIFISASFFHLHEVLISGGSVKKWLNEQRIWMMKGITARSYGSLDVLMDKIGVRNVSFVPTNKGIDDDQMKRYDMDVYDFQASILFLAPMVGLVVLNLVAFAIGFGRIVGSLEDWEETFGQLFLCFYTLLMSFPIIEAMVLRTDKACIPFKVTLGSSLVVLLFLYFLSILFV 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3297183 3302001 - MELO3C006455.2.1 Cme06g00522 329671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00522 739 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 15 738 - -
Cme06g00522 739 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN G2 15 738 - -
Cme06g00522 739 SUPERFAMILY Nucleotide-diphospho-sugar transferases 103 498 IPR029044 -
Cme06g00522 739 Pfam Cellulose synthase 412 730 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cme06g00522 739 Pfam Cellulose synthase 103 403 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cme06g00522 739 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 227 395 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00522 - - - csv:101214210 1285.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00522 Cme-Chr6:3297183 Cme07g01533 Cme-Chr7:21179853 2.96E-147 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g639 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00522 . . . . . . . . . . . . . . . . . Bhi12g01650 . . . . . . . . . . . . . . Csa03g01243 Chy06g00496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007282 0 2 0 0 0 1 0 1 1 1 1 1 2 1 1 0 1 2 0 1 1 2 1 2 2 3 3 2 0 4 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00522 Cme_Chr06 FPKM 24.633236 22.454012 26.659473 26.970537 22.151073 20.417068 20.865191 50.024532 44.642208 46.16386