Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00537 ATGCTTCCATTGCTGCAGCTCATCGCCCTCCTCCTTCCTTTCATCTTCATTTCTTCTTTTTCTGCAGCCTTAGCTCATAATCATGATGACCCAGCAATCAGAACCATGGAGGCTTTCTCCGGGTACCCAGTTCATGAACCTTCCCCACATGGCTTCTCAAACCCCATTACTTCTCTGTCCGTCGATGCTGACACCTTAGTGAAACAGATTGAGGAGCTTTCTACTTTCTCGGATTCACCAGCCCCATCAGTTACAAGGATTCTTTACACCGAGAAGGATGTATTGGCACGAAGGGATGGTTCTGAACCAGACCTTCCCGCCGTTGCCACAGGTTCTCATGCTGATGCAATTCCATTCTCTGGGAAGTATGATGGAGTTGTTGGTGTTTTAGGTGCTTTAGAAGCCATCAACGTCTTGAAAAGGTCCGGGTTTAAACCTAAGAGGTCTCTGGAAATTATCTTCTTCACCTCTGAGGAACCTACACGCTTTGGAATCAGCTGCTTGGGTAGCCGCTTGTTGGCAGGGAGTGATGCACTTGCTAAAGCCTTGGAAACAACTGTTGATGGTCAGAATATATCCTTTATCAGTGCTGCTAGTTCTGCTGGCTACTTAACTGATCCAGCTCGGATATCTACTGTGTTTTTAAAGAAAGGAAGTTACTCTGCTTTCCTTGAATTGCACATAGAGCAAGGTCCCATTCTGGAGGAAGAAGGTATATCAATAGGAGTTGTGACTGCAATTGCAGCCCCTGCTAGTCTGAAGGTTGAGTTTGAAGGCACTGGTGGTCACGCCGGTGCTGTACTGATGCCATATAGAGCCCCGCTATTATTGAGCCAATTTGACAATGAAAATTTCGATGCAAGCAGAAATGATGCAGGACTGGCAGCAGCTGAGCTAGCACTAGCAGTTGAGAAGCATGTATTGGACTCTGGATCCATTGACACTGTCGGTACCGTTGACACTAGAGACATTGATGAAGAGCGTAGAAACATAGTCATTAAGAAGATTCATGAATCTGCCAATGAAATAAGTAAAAGGCGACAGGTCAAACTATCAGAATTCAAAATTATAAACCAGGATCCGCCAGCACATTCTGATAAATCAATTGTAGAGGCTATGGTTTCAGCAGCAAAAGATCTCAATCTCTCACACAAACTAATGATTAGTAGAGCATATCATGATTCACTGTTTATGGCCAGGGTATCCCCTATGGGTATGATTTTCATTCCTTGCTATAAAGGGTACAGCCACAAGCCAGAAGAATTCGCCTCTCCTATGGATATGTCAAACGGAGTCAAGGTATTGGCCCTTACCCTTGCCAAATTGTCGCTGCAGTGA 1338 44.92 MLPLLQLIALLLPFIFISSFSAALAHNHDDPAIRTMEAFSGYPVHEPSPHGFSNPITSLSVDADTLVKQIEELSTFSDSPAPSVTRILYTEKDVLARRDGSEPDLPAVATGSHADAIPFSGKYDGVVGVLGALEAINVLKRSGFKPKRSLEIIFFTSEEPTRFGISCLGSRLLAGSDALAKALETTVDGQNISFISAASSAGYLTDPARISTVFLKKGSYSAFLELHIEQGPILEEEGISIGVVTAIAAPASLKVEFEGTGGHAGAVLMPYRAPLLLSQFDNENFDASRNDAGLAAAELALAVEKHVLDSGSIDTVGTVDTRDIDEERRNIVIKKIHESANEISKRRQVKLSEFKIINQDPPAHSDKSIVEAMVSAAKDLNLSHKLMISRAYHDSLFMARVSPMGMIFIPCYKGYSHKPEEFASPMDMSNGVKVLALTLAKLSLQ 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3364714 3369373 + MELO3C006466.2.1 Cme06g00537 329686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00537 445 Gene3D - 249 361 - -
Cme06g00537 445 PIRSF Amidase_hyd_carb 92 279 IPR010158 GO:0016813
Cme06g00537 445 PIRSF Amidase_hyd_carb 58 99 IPR010158 GO:0016813
Cme06g00537 445 PIRSF Amidase_hyd_carb 285 319 IPR010158 GO:0016813
Cme06g00537 445 PIRSF Amidase_hyd_carb 315 445 IPR010158 GO:0016813
Cme06g00537 445 SUPERFAMILY Bacterial exopeptidase dimerisation domain 252 358 IPR036264 -
Cme06g00537 445 PANTHER ALLANTOATE DEIMINASE-RELATED 288 440 IPR010158 GO:0016813
Cme06g00537 445 SUPERFAMILY Zn-dependent exopeptidases 58 442 - -
Cme06g00537 445 PANTHER ALLANTOATE DEIMINASE-RELATED 57 273 - -
Cme06g00537 445 PANTHER ALLANTOATE DEIMINASE-RELATED 288 440 - -
Cme06g00537 445 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 94 441 IPR010158 GO:0016813
Cme06g00537 445 Pfam Peptidase family M20/M25/M40 111 440 IPR002933 GO:0016787
Cme06g00537 445 Gene3D Zn peptidases 94 435 - -
Cme06g00537 445 PANTHER ALLANTOATE DEIMINASE-RELATED 57 273 IPR010158 GO:0016813
Cme06g00537 445 CDD M20_bAS 66 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00537 K18151 UAH; ureidoglycolate amidohydrolase [EC:3.5.1.116] - csv:101216373 738.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00537 Cme-Chr6:3364714 Cme12g01544 Cme-Chr12:22910003 1.10E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g622 . . . . . Bpe14g01231 . . . . . . Car06g01157 . . Cpe08g00313 . . . . . . . . . . . . . . . . Cone15ag0143 . . Lsi05g01678 . . Cme06g00537 Blo02g00611 . . Bda13g00085 . . Bma02g00804 . . Cmo06g01351 . . . . . . . . . . . . . . Cla05g00480 Cam05g0522 Cec05g0535 Cco05g0536 Clacu05g0522 Cmu05g0494 Cre05g0560 . Csa03g01255 Chy06g00509 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011290 1 0 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00537 Cme_Chr06 FPKM 24.902866 30.724684 9.074535 9.119293 14.638355 16.408819 15.648339 1.408781 1.611013 1.209175