Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00539 ATGGAAGAAACTTTCTTTGATCTTGTGGAGTTTCTCAAGAAGCCCTCAATCGCCGAAACATTTGTCGACATTTTGTTATGTGCAGTTCCGATCTGGCTTGCTGTCATGATCGGCCTCGTTATCGGTTGGTCCTGGCGTCCTCGTTGGACTGGATTGGTTTTCCTCGGCTTTCGGAGTAAGTTTAGATTGTTGTGGACTGCTCCTCCTGGATTTGGAGCTCGGCGGCTTTGGTTGGCCTTCACGGCTTTATCTGCCTTCTCAGTTTGCCGTACTCTTTGGTCCAATTTTTATGGGAAGAGGAAGGCACCGCCGGTACCGCCGACCCCGGATTCTCCGGTGTCATCCACGTTGGTGCACTCGGCAGAAGGAAGCGGGGATGTAATTGCCAATAAAGATGAGGGAAAAGAGCAGGATATTGTTACGGAGAATGATTTAGATCACCTATTGCAACTTCTTGAAGGAAGGCATGGGGAGGCAGAATGGCAAAGTATGATGCAAAGGTCGACCCCAAACTTTGCATATGAAGCCTGGCGCCTTGAGCCTGAGAACAGACCAACTGTTTATCGCAGTAGAACTGTCTTTGAAGATGCAACCCCAGAGATGGTTAGAGACTTTTTCTGGGATGATGAGTTTCGGACTAAATGGGATCCCATGCTTACGTATTTCAAGATATTGGATGAATGTCCTCATTCGGGGACCATGATTGTTCACTGGATTAAGAAGTTCCCCTTTTTCTGCAGTGATAGAGAATATGTCTACGGTCGAAGAATATGGGAAGCTGCAAAGACTTACTATTGCGTTACAAAGGGCGTACAATATCCAAGTTTACCCAGACGTGACAAACCCAGGCGTGTGGATCTTTGTTTTTCAAGTTGGATCATCAGGGCAGTGGAGTCTCGTAAAGGAGATGGTTTAAGGTCTGCTTGCGAGGTCATCCTTGTGCATTATGAAGATATGGGAATCCCCAATGATGTGGCCAAGTTGGGAGTCCGTCATGGAATGTGGGGAACTGTCAAGAAGATCCACTCTGGTTTCAGAGCATACCAGAACGCTAGGAAATCAGATATTTCTGTTTCCAGAAGCGCACTAATGGCCAGAATCACCACAAAGATTTCTTTCGACAGAAACATGGATTCCTCAGAGCCAGAATCAGGTGAAGTACGAACTCAAGTGATGAGGAGAAAGCTCCAGAATGATGGTGGCATAGATTGGAAATGGATAGTCATTGGTGGGACAGTGGCTGTAGTGTGTGGACTTCGAACAGGTGCGATTGGGAAAGCCTTGTTACTTGGAGCAGGACAGAGAATGGCTCGAAGGTGA 1320 47.05 MEETFFDLVEFLKKPSIAETFVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGFRSKFRLLWTAPPGFGARRLWLAFTALSAFSVCRTLWSNFYGKRKAPPVPPTPDSPVSSTLVHSAEGSGDVIANKDEGKEQDIVTENDLDHLLQLLEGRHGEAEWQSMMQRSTPNFAYEAWRLEPENRPTVYRSRTVFEDATPEMVRDFFWDDEFRTKWDPMLTYFKILDECPHSGTMIVHWIKKFPFFCSDREYVYGRRIWEAAKTYYCVTKGVQYPSLPRRDKPRRVDLCFSSWIIRAVESRKGDGLRSACEVILVHYEDMGIPNDVAKLGVRHGMWGTVKKIHSGFRAYQNARKSDISVSRSALMARITTKISFDRNMDSSEPESGEVRTQVMRRKLQNDGGIDWKWIVIGGTVAVVCGLRTGAIGKALLLGAGQRMARR 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3378251 3382471 + MELO3C006468.2.1 Cme06g00539 329688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00539 439 Pfam START domain 159 315 IPR002913 GO:0008289
Cme06g00539 439 PANTHER OS07G0185200 PROTEIN 1 439 - -
Cme06g00539 439 PANTHER PHOSPHATIDYLCHOLINE TRANSFER PROTEIN 1 439 - -
Cme06g00539 439 CDD START_STARD2_7-like 140 348 - -
Cme06g00539 439 SUPERFAMILY Bet v1-like 142 349 - -
Cme06g00539 439 Gene3D - 137 351 IPR023393 -
Cme06g00539 439 ProSiteProfiles START domain profile. 158 350 IPR002913 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00539 - - - csv:101216617 885.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00539 Cme-Chr6:3378251 Cme09g01892 Cme-Chr9:23045948 6.69E-117 dispersed
Cme06g00539 Cme-Chr6:3378251 Cme07g01642 Cme-Chr7:22146098 1.68E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g619 . . . . . Bpe14g01229 . . . . . Cma14g01782 Car06g01159 Car14g01603 . Cpe08g00311 Cpe03g01491 . . . . . . . . . . . . . . . . . . Lsi05g01676 . . Cme06g00539 Blo02g00607 . . . . . Bma02g00806 . . Cmo06g01352 Cmo14g01818 . . . . . . . . . . . . . Cla05g00482 Cam05g0525 Cec05g0538 Cco05g0538 Clacu05g0524 Cmu05g0496 Cre05g0563 . Csa03g01257 Chy06g00512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008740 0 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 2 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00539 Cme_Chr06 FPKM 12.220033 11.842626 15.968251 14.806554 11.888582 7.639853 12.13719 11.061499 11.969491 14.18489