Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00540 ATGAATGAGGACTATAAAAGCATTGAACCGGGGACAGATTTAGGACTTGGCTTGGGTTACACAGACCAGTACATTCAGGGAAGATTGACCAACAGATCAGGTGTAGGTGCAAATGCAGGTTCAATGGTGGATGTGAAATATGTTACCACTGACTCCCTGTCTGAACTAGTTTGGTCTCCACACAAAGGTTTGAGCCTTAGATGCGCTGACTCCAGCTTCAATAATAGAAAAACATCGATCTTGTGGGATGCAGCAGCCAATAAAGCAAGTTTTGCACTGCCACAAAGTGTAATAGCTGAGAAGTCTACTTCCGATAATTTACTTGATAATAGAACTATTGTTTTGTCACAAGCAGAGAGTCATTTGAAGAATATATCTGAGGGTAAACAAACTTCAAATAGTACCAGCTCTGATGATGCTGCCTGCATGACAAGCGAAGTACAAATGACACTGGATAAAGGGGTTGGAAACTTTGCAAATGAAACACTTAGCAATGCAGACGTGGCTGTTGTCTGTTTTAAAGAGGAAGATCTACCAGCAACTGGAGAAGTGGATATAACTAACGCAGGAAACATTCTGGTGGATGAAGTATTGACAATTGGGAAAAATGACAGCTCATCAGTTTCCATAAACAGAATAAATGAAGTATCAATGAAACGAGGTGAACCAGAGCTAGATAAACTACAACATGAATCGTTAGATATGGATTCAGTTCGTGGAGACATAAATGAAGATAAATATATTTCCACTGGAAAGGTTGTTCTTCAACCTTTGAATATGTTTGAGCCTACCGTCTCTCGTCCAACTTTTTTAGGGAAACTGGAATCATCTGCAGAAAATGACTCACAAAATATGAATGATAAAAATGCTGGGTTTGAGGGAAATAAAATTATAGTGACAGTGACAGATTCTTCACATGAAGTGAGAGGCAGTAACCAGCAAGAAAAAGACAATTGCAATAACGGGGTTGATTCAGCTTCTCCAAGTAGTTGTCATATGCATTGGATACAAAGGAAAGGGAAGGAAAAGGCTCTGTCTGATGGTGATGTTCATGGAAGAATGTTGAACAACGATGACAACAGCTACGGAAGTGTTGAAAGTTGTAACAGTGCTTTTCGTTCAACGTCTAAGCGACGATGGAGCTTTGAACAACACTTAATTGTTGGGAACAAGAGAGCCAAAAAGCAAGATGGTAATGCTTCTGGTCCAACATCAAACCTTGGTCAAGATAGCTCTTTCATGATCTGGATATCTAACATGATGAAAGGATTCTCAGAGTCTATACAAGATGAGGCACCTACTCTTGATCTTACCCTTGCAAAATGTGATGTTGAACAAGGGGGCCAAAATGAAGAACCAATGTATAAGAAGATCAATGCTCCTGGGTTCAGTGGCATAGGTTTTCAATCTATCTTCCGGTCCTTGTACAATCCAACAATGAGAGGTGAGGAAGGAGCACCTAGTGCAACTTGTCAAGCCAAGCAAGAAGCTAAGGGAATTGAAATTATTAAAAACAGTTGTGATCTTAATGCAACTCCAATAGCTTGTTTCGGAGAGTCTGATCGCTTCGGCAAACAACTACTCCTGAACAATGAGAATGCCACAGAGCTTACATCTGGAAATGGACCAACCCTGCTTATACAACTAAAGAATTCTCCTGAAATTTCCTGTGGCAGTCATCAAAGTCATAAAACCCGGTCTCAGGAGAACCAGAATTCTTGCAATCTTGTTAGTGGTGCTGGAACAGGTGAAGTTATGCCCTCTGCTTTGGGTACGTGCAAGTCAAACGGTACAGAGAATGTTGACTGTGATCAACTATGTGGAAAGATTAACCATACTACTGGTAATGTGAGTGATCCTCTCAAAAGCTTGTGGATTTCCCGGTTTGCTGCAAAAGCATCTGGGTTTACATCAAACCCAGAAACTTCCAACCTAAATACCAAGGATGATTCGCAATGTTCCATGCACAGTCCCAGACATATTCCTGGCCCTCAAAATCACATTGATCATCATTCCATGGATGACTTAGATACTGCTGTTAGTAAGGAACAACACAATATAGCTAATACTGAGACTTCACCTGGTCATAAGGAATTCAAAAGCCATAATGAGCAGAAATCCATTAGTAAGTTCAAATCTGTTTTACGTTCTCCTAAAGTAAGAAGTCCAGAGTTAATGGCTTCTGTCTTTGCTAGGAGATTAGGTGCACTCAAACACATCATACCGTCAGATTTGACCATTAATGTGGGTAATGAAACTGTGACCTGTTTCTATTGCGGCACAAGAGGCCATAATCTACATAATTGTTCTGAAATTACTGAACGAGAAATTGAGGATCTTTCAAGAAATATCAGGTTCTGTAACGAGACAGTTGATCCCCCTTGTTCATGCATTCGGTGCTTTCAGCCCAATCACTGGGCTATTGCATGCCCACTCGCTCCCACGAGATGTCAACAGAAATCTGATTCCCATGTTTCTTTGGCGGATCGTTGTGATTCTGGTAAGCTCCAACTTACTTCTGGGATTGGTTTAAGTGTAAAACCCCAACACCTTCGGGATAGAAAAATGGATGGGGTTGCATCGACTCTAGATGATACTGGTGATCCCAATATTAAAACTGATCTTAGTCTTGATCTTAAAATCACTGAACAATTGAAGCCTGCAGCAATATCGTTTCCAAAATGTGTTCTTCCAAAATTACCAGAGAATAATTTGAAAGGAAGTGAGATGGTACAAGTTCATAGCTTTGTTGACAATCAGAATTCCAATATTTCCCAAGCGGTCTTCAATGCAGTAAAAAAACTTCGACTGTCTCGAAGCAATATCCTTAAGTGTATGAGTTCCCACATGTCACTGTCACTTCTTGATGGTTTTTTCTTGCGTATTCGGCTTGGGAAGTGGGAAGAAGGACTTGGGGGAACTGGGTACCATGTGGCTTGCATAAGGGGTGCACAACTCACAGAGAATTCTATTTCTGTTATAGTTCGAGGGGTTGAATGCCAAGTTCAGACCCAGTACATTTCCAACCATGATTTTCTTGAGGATGAGCTGAGGGCATGGTGGTGTACAGCCTCGAAAGATGGCTGCAAAGCTCTTCCTCTGGCAGCAGATTTAAGAGCCAAAGTGAAAAAGAAAAAGGAGTTGGGTTTCTAA 3153 40.95 MNEDYKSIEPGTDLGLGLGYTDQYIQGRLTNRSGVGANAGSMVDVKYVTTDSLSELVWSPHKGLSLRCADSSFNNRKTSILWDAAANKASFALPQSVIAEKSTSDNLLDNRTIVLSQAESHLKNISEGKQTSNSTSSDDAACMTSEVQMTLDKGVGNFANETLSNADVAVVCFKEEDLPATGEVDITNAGNILVDEVLTIGKNDSSSVSINRINEVSMKRGEPELDKLQHESLDMDSVRGDINEDKYISTGKVVLQPLNMFEPTVSRPTFLGKLESSAENDSQNMNDKNAGFEGNKIIVTVTDSSHEVRGSNQQEKDNCNNGVDSASPSSCHMHWIQRKGKEKALSDGDVHGRMLNNDDNSYGSVESCNSAFRSTSKRRWSFEQHLIVGNKRAKKQDGNASGPTSNLGQDSSFMIWISNMMKGFSESIQDEAPTLDLTLAKCDVEQGGQNEEPMYKKINAPGFSGIGFQSIFRSLYNPTMRGEEGAPSATCQAKQEAKGIEIIKNSCDLNATPIACFGESDRFGKQLLLNNENATELTSGNGPTLLIQLKNSPEISCGSHQSHKTRSQENQNSCNLVSGAGTGEVMPSALGTCKSNGTENVDCDQLCGKINHTTGNVSDPLKSLWISRFAAKASGFTSNPETSNLNTKDDSQCSMHSPRHIPGPQNHIDHHSMDDLDTAVSKEQHNIANTETSPGHKEFKSHNEQKSISKFKSVLRSPKVRSPELMASVFARRLGALKHIIPSDLTINVGNETVTCFYCGTRGHNLHNCSEITEREIEDLSRNIRFCNETVDPPCSCIRCFQPNHWAIACPLAPTRCQQKSDSHVSLADRCDSGKLQLTSGIGLSVKPQHLRDRKMDGVASTLDDTGDPNIKTDLSLDLKITEQLKPAAISFPKCVLPKLPENNLKGSEMVQVHSFVDNQNSNISQAVFNAVKKLRLSRSNILKCMSSHMSLSLLDGFFLRIRLGKWEEGLGGTGYHVACIRGAQLTENSISVIVRGVECQVQTQYISNHDFLEDELRAWWCTASKDGCKALPLAADLRAKVKKKKELGF 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3394036 3400828 + MELO3C006469.2.1 Cme06g00540 329689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00540 1050 MobiDBLite consensus disorder prediction 557 579 - -
Cme06g00540 1050 SUPERFAMILY Plus3-like 927 1047 IPR036128 GO:0003677
Cme06g00540 1050 SMART rtf1 926 1026 IPR004343 GO:0003677
Cme06g00540 1050 MobiDBLite consensus disorder prediction 636 652 - -
Cme06g00540 1050 Gene3D - 750 813 - -
Cme06g00540 1050 ProSiteProfiles Plus3 domain profile. 926 1050 IPR004343 GO:0003677
Cme06g00540 1050 SMART c2hcfinal6 755 771 IPR001878 GO:0003676|GO:0008270
Cme06g00540 1050 SMART c2hcfinal6 796 812 IPR001878 GO:0003676|GO:0008270
Cme06g00540 1050 MobiDBLite consensus disorder prediction 636 656 - -
Cme06g00540 1050 ProSiteProfiles Zinc finger CCHC-type profile. 756 771 IPR001878 GO:0003676|GO:0008270
Cme06g00540 1050 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 56 1050 - -
Cme06g00540 1050 Pfam Plus-3 domain 932 1022 IPR004343 GO:0003677
Cme06g00540 1050 Gene3D - 927 1047 IPR036128 GO:0003677
Cme06g00540 1050 Coils Coil 770 790 - -
Cme06g00540 1050 MobiDBLite consensus disorder prediction 305 329 - -
Cme06g00540 1050 PANTHER UNCHARACTERIZED 56 1050 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00540 - - - csv:101216376 1955.64
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g618 . . . . . Bpe14g01228 . . . . . Cma14g01781 . Car14g01602 . . Cpe03g01490 . . . . . . . . . . . . . . Cone14ag0137 Cone15ag0142 Cone7ag0299 Cone4ag0300 Lsi05g01674 . . Cme06g00540 . . Bda11g00614 Bda13g00089 . Bpe13g00571 Bma02g00807 . . . Cmo14g01817 . . . . . . . . . . . . . Cla05g00483 Cam05g0526 Cec05g0539 Cco05g0539 Clacu05g0525 Cmu05g0497 Cre05g0564 . Csa03g01258 Chy06g00513 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004918 3 0 0 1 2 1 1 1 1 1 1 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 1 5 5 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00540 Cme_Chr06 FPKM 16.435839 18.682571 25.656994 25.395403 17.587219 18.114573 19.073753 27.709442 26.330269 25.270906