Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00543 ATGGCTTTATTACACAGTCGTCTTTGCCATGCCACGAACTTCTTCGATACATTTCAAACTGAATTCCACGGTTCTCACATTTTACTGAAGTACGGTTCGTCTGTTGTCTTCAGAAACCGCTCTTTCTGCTCTCCGTTTTATGATTTAACAACCGGTACTTTTTCCAATCGAATATCGTATAGGAGTTTAAGCTCACGAACACCCATTTACAGATATAATTTGAGAAGAAATTTATCACGTGTTAGTTGGATAGACAGGTGGAATGAAACCGCGAAACAAAATCGCCCTAAACCACCTCGTGCTGTGTTGGACTATCCCAGTAGCGATGAGAATGAAGTTTCAATTTCAAGAACAGGTTTTTCAAAGAGTTATAGAGCTAGTAGTCGGATTGATGATGATGGAAGTGGCGGGAGTACAATGGAGAAGATTGTGAGGAAATTGAAGAAATTTGGGTACATCGACGATGAGAATAAAGAGAAGGGGGAAGAGAGAGCCATTGAAAAGGGGTCTGTGGAGGACATACTTTATATTGAGGAAGGAATGTTGCCTAATACTCGAGGTGGGTTTTCTAAGGAATCGCCTATGGGAGATGAGGACATGTTTGGAAGTAATGGGGAAGTTAGGTTTCCATGGGAGAAGCCAAAAGAAAAGGAAGATACAGATGGGGATTCAACAAGGAGAAGGGGCAGGGCATCTTTGGCAGAATTGACTCTTCCTGAGCCAGAATTGAGAAGGCTGAGGAACTTGACTTTCCAGAAAAAACACAAGATGAAGATAGGAGGTGGTGGAGTGACTCAAGCTGTTGTGGGTGTCATTCATGAAAAATGGAAATCTTCAGAGATTGTGAGGCTTAAAATTGAAGGTCCTCCTGCACTTAACATGAAAAGGATGCACGAGATATTGGAGAGAAAAACCGGTGGACTGGTTATTTGGAGGTCAGGAACTTCGGTGTCTCTATATAGAGGTGTAAGCTATGAACTTCCTGAAGCACCACAATTTAACAAACGGATTTACAAGAGAAATGAAATCACTGCATTGCCTAGAACTGGTGCTAGTACTATAGTTCCTTCTGAATCTTCTTCTCACCGTAATGTTTATGCTTTGCAACAAAAAAAAGAAGAAACTTCCATAGAGGGTGAACAGTGCAGCGAACAATTGACAAAAGTACAAGTGAATTATGAGGATGAAGTAAATAAATTGCTGGATGGTTTGGGTCCAAGATACACAGATTGGCCAGGATTGGATCCTTTACCCGTAGATGCAGATATGCTCCCAGGAGTAGTTCCTGATTATGAACCTCCATTTAGAATACTTCCTTATGGAGTGAGATCTTCTCTTGGAGTTAAGGAAGCCACAGCCTTAAGAAGACTTGCCAGAAGACTCCCTCCTCATTTTGCATTAGGCAGAAACAGGCAGCTTCAAGGATTGGCTGTTGCAATGGCTAAATTGTGGGAACGAAGTTCAATTGCAAAAATTGCCCTGAAACGAGGTGTGCAGCTGACTACTAGTGAAAGAATGGCCGAAGAGATCAAGAAATTGACAGGAGGCATTCTTCTGTCAAGAAACAAAGACTTTCTGGTATTCTATAGAGGAAAGAGTTTCTTGTCGCCTGAGGTAACTGAAGCTTTGCTAGAAAGGGAGAGGTTGGCAAAATCTCTACAGGACGAGGAAGAACAGGCAAGGTTGAAAGCATCAGCCTTAGTGGTACCTGGCATTGAGAAAACAGAGCAATCTGGAACTGCTGGTTCTCTAGAGGAAACACTAGATGCTGATGCTAAATGGGGAAAGGCTCTGGATGACAAGCACAAGGAAAACGTAATGCGGGAAGCTGAACAATTGAGGCACACCGACCTTGTTAGGAAGTTGGAACGGAAGCTTGCTTTTGCTGAAAGAAAATTGGTGAAAGCCGAACAAGCATTATTTAAGGTCGAAGCATTTATGACACCAGCGAAACGGCAGGCTGAACCTGATAGCATAACTGAGGAGGAAAGATTTATGTTTCGTAAGCTTGGTCTAAGAATGAAAGCTTTCTTGCTTCTAGGTAGGCGTGAAGTTTTCGATGGCACAGTGGAGAACATGCACTTGCATTGGAAGTATCGTGAATTGGTGAAGATCATGATAAAAGCCAATTCCTTTGACCATGTCAAGAAGATTGCTTTGCAACTCGAAGCTGAGAGTGGGGGTGTCCTAGTTTCAATTGACAAAGTCTCCAAAGCATATGCTATAATCGTTTATCGGGGAAAGGATTATCAACGGCCATCTTTGCTGAGACCCAAAAATCTTTTAACAAAGAGGAAGGCTCTAGCACGCTCGATCGAGCTTCAAAGGCATGAGGCTTTGCTAAAACATATATCAGCAATGCAGAGTAGAGTGGACAAACTAAAATCCGAGATTGAACAAATGGAGAAGGTGAAAGACCAAGGGGATGAAGTATTATATAATACTCTAGATTCTGCTTATCCTACTGACAATGACTCGGAGGAAGAAGACTACGGTACATATGAGGCATATGGTGAGGATAGTGATGTTGAAGATGAAGATGATATCATCGCTAGTGACGAGTACCTAGAAGCAGATATTTCACATGGAATCCAAGTACAAGAATCAGAGGTTGAATATGAGACATCTGAATCACGTCGAGTATGA 2646 42.14 MALLHSRLCHATNFFDTFQTEFHGSHILLKYGSSVVFRNRSFCSPFYDLTTGTFSNRISYRSLSSRTPIYRYNLRRNLSRVSWIDRWNETAKQNRPKPPRAVLDYPSSDENEVSISRTGFSKSYRASSRIDDDGSGGSTMEKIVRKLKKFGYIDDENKEKGEERAIEKGSVEDILYIEEGMLPNTRGGFSKESPMGDEDMFGSNGEVRFPWEKPKEKEDTDGDSTRRRGRASLAELTLPEPELRRLRNLTFQKKHKMKIGGGGVTQAVVGVIHEKWKSSEIVRLKIEGPPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYELPEAPQFNKRIYKRNEITALPRTGASTIVPSESSSHRNVYALQQKKEETSIEGEQCSEQLTKVQVNYEDEVNKLLDGLGPRYTDWPGLDPLPVDADMLPGVVPDYEPPFRILPYGVRSSLGVKEATALRRLARRLPPHFALGRNRQLQGLAVAMAKLWERSSIAKIALKRGVQLTTSERMAEEIKKLTGGILLSRNKDFLVFYRGKSFLSPEVTEALLERERLAKSLQDEEEQARLKASALVVPGIEKTEQSGTAGSLEETLDADAKWGKALDDKHKENVMREAEQLRHTDLVRKLERKLAFAERKLVKAEQALFKVEAFMTPAKRQAEPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKKIALQLEAESGGVLVSIDKVSKAYAIIVYRGKDYQRPSLLRPKNLLTKRKALARSIELQRHEALLKHISAMQSRVDKLKSEIEQMEKVKDQGDEVLYNTLDSAYPTDNDSEEEDYGTYEAYGEDSDVEDEDDIIASDEYLEADISHGIQVQESEVEYETSESRRV 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3424151 3428781 - MELO3C006472.2.1 Cme06g00543 329692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00543 881 Pfam CRS1 / YhbY (CRM) domain 238 321 IPR001890 GO:0003723
Cme06g00543 881 Pfam CRS1 / YhbY (CRM) domain 449 530 IPR001890 GO:0003723
Cme06g00543 881 Pfam CRS1 / YhbY (CRM) domain 660 746 IPR001890 GO:0003723
Cme06g00543 881 Gene3D - 445 541 IPR035920 -
Cme06g00543 881 Gene3D - 658 760 IPR035920 -
Cme06g00543 881 Gene3D - 236 336 IPR035920 -
Cme06g00543 881 SUPERFAMILY YhbY-like 446 537 IPR035920 -
Cme06g00543 881 MobiDBLite consensus disorder prediction 209 230 - -
Cme06g00543 881 ProSiteProfiles CRM domain profile. 444 541 IPR001890 GO:0003723
Cme06g00543 881 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 1 877 IPR045278 GO:0000375|GO:0003729
Cme06g00543 881 SUPERFAMILY YhbY-like 237 326 IPR035920 -
Cme06g00543 881 PANTHER CRM-DOMAIN CONTAINING FACTOR CFM3A, CHLOROPLASTIC/MITOCHONDRIAL 1 877 IPR033262 GO:0000373
Cme06g00543 881 MobiDBLite consensus disorder prediction 861 881 - -
Cme06g00543 881 SMART CRS1_YhbY_2 238 321 IPR001890 GO:0003723
Cme06g00543 881 SMART CRS1_YhbY_2 446 530 IPR001890 GO:0003723
Cme06g00543 881 SMART CRS1_YhbY_2 659 746 IPR001890 GO:0003723
Cme06g00543 881 Coils Coil 777 811 - -
Cme06g00543 881 MobiDBLite consensus disorder prediction 205 232 - -
Cme06g00543 881 ProSiteProfiles CRM domain profile. 236 332 IPR001890 GO:0003723
Cme06g00543 881 ProSiteProfiles CRM domain profile. 657 757 IPR001890 GO:0003723
Cme06g00543 881 SUPERFAMILY YhbY-like 659 756 IPR035920 -
Cme06g00543 881 Coils Coil 619 639 - -
Cme06g00543 881 Coils Coil 539 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00543 - - - csv:101216848 1580.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00253 Cme-Chr2:2108665 Cme06g00543 Cme-Chr6:3424151 0 dispersed
Cme02g01739 Cme-Chr2:24397342 Cme06g00543 Cme-Chr6:3424151 2.86E-178 dispersed
Cme03g00079 Cme-Chr3:1144261 Cme06g00543 Cme-Chr6:3424151 4.80E-109 dispersed
Cme04g01927 Cme-Chr4:26984760 Cme06g00543 Cme-Chr6:3424151 7.32E-149 dispersed
Cme06g00543 Cme-Chr6:3424151 Cme09g00433 Cme-Chr9:4140024 1.28E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g611 . . . . . . . . . . . Cma14g01778 . Car14g01599 . . Cpe03g01487 . . . . . . . . . . . . . . . . . Cone4ag0294 Lsi05g01670 . . Cme06g00543 . . . . . . . . . . Cmo14g01815 . . . . . . . . . . . . . Cla05g00486 Cam05g0529 Cec05g0542 Cco05g0542 Clacu05g0528 Cmu05g0500 Cre05g0567 . Csa03g01261 Chy06g00516 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011586 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00543 Cme_Chr06 FPKM 12.251593 12.697795 10.586571 11.140567 3.905192 3.669173 4.327059 6.110424 6.572991 5.905531