Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00553 ATGTATTCCTCAATCCGCCATTGCTCCTCTCTTCTCTTCTTACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCATTACTCCGCCGCCCAAGCCCCCGACGCCGACGGCTACACCTGCTCCGCCAACCAAACTGCCAACCCATGCCAGGCCTATGTCTTCTACAGAGCCTCCCCTCCCAATTTCCTCGACTTGGCTGCCATTGCTGACCTCTTCTGGGTCAGCCGCCTCGAAATTTCCCGTCCCAGCAACATCTCCGACTCCAACGCTACTTTCCCTCTCCTCCCCGGCCAACCTCTCTTCATTCCCATCACCTGCTCCTGCCACTCCGTCAACGCCTCCGTCAGTATCTCCTACGCTAATCTCTCCTACAAAATCAACGCCGGCGACAATTTCTGGCTCGTCTCCACCTCCAAATTTCAAAATCTTACCACTTTCCAATCCGTGGAAATCGCCAATCCCACTTTAATCCCAACCAATCTCGACATCGGCGTCAACGTTGTTTTCCCCATCTTCTGCAAATGCCCTAATCCCACTCAACTCCAAAATCGGATCAATTTCATGGTCTCTTACGTGATTCAGCCCGCCGATACTATGTCCTCCATAGCTTCAAGGTTTGGAGTACAAGCATCGGAAATCAGAGCCGCGAATTGGCCAAACCCGCAACCATTCGAAACGATTTTCATCCCGGTGAGTCATCTTCCCAATTTGACACAGCCCATTGTGCTGCCGCCGTCTCCGGAGCAGGCACCGGCGCCAGTGAGAGAAGTGAAAAACAGAGCAGTTACAGGGCTGGCAATTGCTTTGGGGATTGTTGGGTTTTTGCTGATTTTGGCGGTGGGTTTGTGGGTTGTTGGAGTGGGGAAGAGGAGGAAGAATGAGAGGGAAATGGAGGAAAGATTTGAGAAACAGAGAGTGCAGGATGTTGGGATTTGGAAAGGGAAAAGGAAGGAAATGGAAGTTGATTTAATGGCGGATGTGTCTGATTGTTTGGATAAATATAGAGTGTTTAAAATTGAGGAGCTTAATGAAGCGACGGATGGATTTAGCGAAAGTAGCTTGATTCAAGGTTCGGTTTATAAGGGAACAATCGGTGGAGTTGATTTTGCTATCAAGAAGATGAAGTGGAATGCCTATGAACAGCTCAAGATCTTGCAGAAGGTAAACCATGGTAATCTAGTGAAGCTTGAAGGCTTTTGCGTTGACCCTGAAGATGCAACCTGCTACCTAATTTATGAATATGTAGAGAATGGTTCACTTTATTCATGGCTACACGAAAGCCAAAAGCAGAAACTAAACTGGAGAACAAGATTGAGGATTGCGATCGATGTTGCTAACGGACTACTATACATCCATGAGCACACGAGGCCGCAAGTTGTTCACAAAGACATAAAAAGCAGCAACATTCTGCTGGATGCAAACATGAGGGCTAAGATAGCCAACTTTGGGTTGGCAAAGTCAGGATGCAATGCCATAACTATGCACATTGTTGGGACTCAAGGCTATATAGCACCGGAATACATAGCCGATGGAGTCGTGTCGACGAAGATGGACATTTTCTCGTTCGGAGTTGTTCTGCTCGAGCTGATATCTGGGAAGGAGGCCATTGACAACGAAGGAGATGTTTTATGGATGAGAGCCAGTACTGAATTTTTGGACGGAAAGGAGAAGGATAAGTTGGAAAGTTTGAAGAGTTGGATTGATGAAGCGCTTTTCGAGCAATCTTGCCCGATGGAGAGTTTGATGGATGCGATGAATGTGGCTGTTAGTTGCTTGCAGAAGGATCCAACAAAGAGGCCGAGCATGGTGGAGGTGGTTTATGCGCTAAGCAAGACCGATGAGGCCGTGTTCGATTTCTCTGATGATAATTTATCAGCTCCTCCCTTAACAGCTAGGTAA 1905 47.24 MYSSIRHCSSLLFLLFFFFFFFFFFFFHYSAAQAPDADGYTCSANQTANPCQAYVFYRASPPNFLDLAAIADLFWVSRLEISRPSNISDSNATFPLLPGQPLFIPITCSCHSVNASVSISYANLSYKINAGDNFWLVSTSKFQNLTTFQSVEIANPTLIPTNLDIGVNVVFPIFCKCPNPTQLQNRINFMVSYVIQPADTMSSIASRFGVQASEIRAANWPNPQPFETIFIPVSHLPNLTQPIVLPPSPEQAPAPVREVKNRAVTGLAIALGIVGFLLILAVGLWVVGVGKRRKNEREMEERFEKQRVQDVGIWKGKRKEMEVDLMADVSDCLDKYRVFKIEELNEATDGFSESSLIQGSVYKGTIGGVDFAIKKMKWNAYEQLKILQKVNHGNLVKLEGFCVDPEDATCYLIYEYVENGSLYSWLHESQKQKLNWRTRLRIAIDVANGLLYIHEHTRPQVVHKDIKSSNILLDANMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYIADGVVSTKMDIFSFGVVLLELISGKEAIDNEGDVLWMRASTEFLDGKEKDKLESLKSWIDEALFEQSCPMESLMDAMNVAVSCLQKDPTKRPSMVEVVYALSKTDEAVFDFSDDNLSAPPLTAR 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3497459 3501196 - MELO3C006481.2.1 Cme06g00553 329702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00553 634 Gene3D LysM domain 190 232 IPR036779 -
Cme06g00553 634 ProSiteProfiles Protein kinase domain profile. 276 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00553 634 CDD LysM 191 219 IPR018392 -
Cme06g00553 634 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 11 628 - -
Cme06g00553 634 Gene3D Transferase(Phosphotransferase) domain 1 417 625 - -
Cme06g00553 634 SMART serkin_6 351 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00553 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Cme06g00553 634 Pfam LysM domain 193 222 IPR018392 -
Cme06g00553 634 ProSiteProfiles LysM domain profile. 191 237 IPR018392 -
Cme06g00553 634 PANTHER - 11 628 - -
Cme06g00553 634 Gene3D Phosphorylase Kinase; domain 1 321 416 - -
Cme06g00553 634 SUPERFAMILY Protein kinase-like (PK-like) 335 611 IPR011009 -
Cme06g00553 634 Pfam Protein kinase domain 373 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00553 634 SMART LysM_2 192 232 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00553 - - - cmo:103483654 1237.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00571 Cme-Chr3:8853143 Cme06g00553 Cme-Chr6:3497459 9.16E-10 dispersed
Cme06g00553 Cme-Chr6:3497459 Cme11g00301 Cme-Chr11:3234179 2.62E-116 dispersed
Cme07g01657 Cme-Chr7:22247442 Cme06g00553 Cme-Chr6:3497459 3.86E-15 dispersed
Cme06g00553 Cme-Chr6:3497459 Cme08g00504 Cme-Chr8:3112471 5.52E-104 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64937 PF00069 Pkinase 8.90E-40 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00553 Cme_Chr06 FPKM 0.801802 2.468178 0.0 0.0 0.0 0.0 0.0 0.0 0.137355 0.026716