Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00555 ATGGAGACGGGGCTCCGGCCCACTCCCTCCGCCGCTCCTCTTCTCGGAAAGTACCAATTAGGCCGCCTCCTCGGTCGTGGAAGTTTCGCCAAAGTTTATCAAGCAGTTTCTTTAGCAGATAACTCCACCGTTGCCATCAAAATCATCGACAAATCCAAAACCATCGGCGCTGTCATGGAACGTTGCATAGTCCGGGAGGTTGCCGCCATGCGCCGCCTCGATCACCATCCAAACATCCTCAAAATCCACGAAGTCATGGCGACAAAGTCCAAAATCTACCTGGTGGTTGAATTCGCTGGTGGCGGCGAACTCTTGGCTAAAATTTCCCGTCGTGGGCGATTCACCGAAACCGTCGCCCGCCGGTACTTCCAACAACTCGTCTCGGCCCTTAAGTTCTGCCACGAAAACGGCGTCGTTCACCGTGACGTGAAGCCGCAGAATCTTTTGCTGGACGAACAGGGCAATCTGAAAATCTCTGATTTCGGTCTCTCTGCTTTACCCGAACAGCTCAGAGACGGATTACTCCACACGTCTTGTGGAACTCCAGCGTACTCAGCGCCAGAAGTCATGACCTGTCGTAGTGGTGGCGGATACGACGGCGGAAAGGCTGACGCCTGGTCATGTGGAGTAATTTTATTCGTAATGCTCTCTGGGTTTCTCCCTTTCGACGACAGTAATCTAGGGGCGATGTACAGAAAAATCCGCAGGCGAGAATTCCAAATCCCTGATTGGGTATCGAAACCTGTCCGATTCCTAATATATCACCTCCTCGATCCGAATCCCAAAACGAGGATGAGCATTGATGCGTTAATGCAAAACCCGTGGTTCAAGAAATCGTTGCAGTTGAAACAGGGCAATGGGAACCTACTGCAATCGATGAGGGATTATCGAATGGGGAAAGAGAGGGGAATTGGGGAGATGAATGCGTTCGATATAATTTCGATGTCTTCGGGGTTGAACTTATCGGGGCTGTTTGAAACGACGGAGAGGAGGGCGGAGAGGAGGTATACGTCGAGGGCGACGGTGATGGAGGTGGAGGAGAGGGTCAGGGAGATGGGCGGAGAGTTGGGGTATGAAGTGGAGGTGGGGGGGAAGGGAGGGGCGATCGGTATGGGGAAGAGGGGAGTGGTGGTGGTGGTGGAAGTGGTGGAGGTGGCAGTGGCGCCGGCGGCATTGACGATGGTGGAGGTGAGGGTGGTGAAAGGAGGGGAGGAGTTTGAAGAACTCCATTGGAGGTGTTTTGAAGGTAAACTTGAAGGATTTGCAGTTCCATGGCAGAGGAAATGTAATTTGTGA 1296 52.85 METGLRPTPSAAPLLGKYQLGRLLGRGSFAKVYQAVSLADNSTVAIKIIDKSKTIGAVMERCIVREVAAMRRLDHHPNILKIHEVMATKSKIYLVVEFAGGGELLAKISRRGRFTETVARRYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQGNLKISDFGLSALPEQLRDGLLHTSCGTPAYSAPEVMTCRSGGGYDGGKADAWSCGVILFVMLSGFLPFDDSNLGAMYRKIRRREFQIPDWVSKPVRFLIYHLLDPNPKTRMSIDALMQNPWFKKSLQLKQGNGNLLQSMRDYRMGKERGIGEMNAFDIISMSSGLNLSGLFETTERRAERRYTSRATVMEVEERVREMGGELGYEVEVGGKGGAIGMGKRGVVVVVEVVEVAVAPAALTMVEVRVVKGGEEFEELHWRCFEGKLEGFAVPWQRKCNL 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3506603 3508116 - MELO3C006483.2.1 Cme06g00555 329704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00555 431 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
Cme06g00555 431 PANTHER SERINE/THREONINE KINASE 11 427 - -
Cme06g00555 431 Pfam Protein kinase domain 18 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00555 431 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 11 427 - -
Cme06g00555 431 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Cme06g00555 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Cme06g00555 431 Gene3D Transferase(Phosphotransferase) domain 1 105 297 - -
Cme06g00555 431 SMART serkin_6 18 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00555 431 CDD CIPK_C 308 412 - -
Cme06g00555 431 Gene3D Phosphorylase Kinase; domain 1 11 104 - -
Cme06g00555 431 Pfam NAF domain 307 361 IPR004041 GO:0007165
Cme06g00555 431 Gene3D Kinase associated domain 1, KA1 303 422 - -
Cme06g00555 431 ProSiteProfiles Protein kinase domain profile. 18 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00555 431 SUPERFAMILY Protein kinase-like (PK-like) 15 282 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme05g00513 Cme06g00555 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00555 Cme-Chr6:3506603 Cme11g01444 Cme-Chr11:21356838 3.45E-122 dispersed
Cme01g02346 Cme-Chr1:31783954 Cme06g00555 Cme-Chr6:3506603 8.19E-18 transposed
Cme08g02095 Cme-Chr8:26546462 Cme06g00555 Cme-Chr6:3506603 1.74E-08 transposed
Cme09g00718 Cme-Chr9:8402832 Cme06g00555 Cme-Chr6:3506603 1.00E-09 transposed
Cme05g00513 Cme-Chr5:4722555 Cme06g00555 Cme-Chr6:3506603 3.63E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64938 PF00069 Pkinase 3.90E-68 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00555 K12761 - csv:101217555 736.873