Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00565 ATGGGAAATGAGATGGGAAACAATAACACATCTGAGTTTAGAGAGGAAGAAAAGGAAAAAGCCGAAGGTCCAGAACTTTTTTTACTAGAAGGCGGGAAAAATGAAGGAGAAGCCGATGAAGTTGCAGGCTTCAGCCAAAAAGAGGCACGGCCGAGTTCTGGTGAGGCAGATAAAGTAAATGGTGATCATCATGTGAGCGAGAAAGAGGAAGAGAAAAATAAAGTATTTGATATAGAAGAGTTTCAAGTGGTTTCTGAAAACTTACATGATCAAACTATAGAGGACAATGTGGTCGAGGTCAAGTCTAAAGAAAATAAAGAAATGGAGTGCGACTCAGAAGAGAATAGATCCGATAAGCAGGCTTCAAGTCAGAAAGAGGAAGAAGAGAAGAGAGGTTCCAATTTGAACACGACAGTACTTTCATTGAATGAGCCGAAACTTGAGAAGACTGAAGAAAAATGCAAGGATGCTTTGGAATCGAGCTCGAAAAACACTTGCCATTCAGCAGATTGTGCCGTGCCAGATTCAGAAGAAAACACCAATATGAATCAAGTTATTGATACTGACCGAGATACTAATAAGGAAAATGATGGAGAGAAAGGAAAGGGTTCCGTCATCAACATGATAACACATGCATCAGAAGATGAAAAATCTGAAACGACATCAGATGTTAATGTCGATCAAGTTATTGATAATGATGGAGATACAGATAAGGAAAATGATGGAGAAAGAGGAAGAGGTTCAAGCTTCAACACGACAACGCATGCACCAAAGGATCCAAAATCTGAAATAAATTCAGACTTCGATTCTGATCAAGTTATTGATACTGATGTAGATGCACATAAGGAAAACGATGAAGAGAGGAGAAAGGGTTCCAACTTCGAGATGACAAATTCATCAGAAAATCCAAAATCTGAAAAAACTTCAAACTTGGATAGTAATCAAGTTGTTCGTACTGATTGGGATGCAGATAAGGAAAACGATGAAGGGAGGGGCAACAGCTCCAACTTCGACATGTTAATAGATGCATCAAAAGATCCAAATTCTGAAAATAGTTCAAATCTTAGGTGTAGTCAGCACGAGTCACCTGAAACCAACGCTGAATCATTGACAGGATCAAGTGATGATGGAGGCACGGATATGGAGAAGAAAAAGGGTGATCTAGTGGAGCCAAGACAATGCCATGGGTATACAGCGCCAGCTGCCAAAAATGTTGATACTAAAGATAAAGGAACTGTGACAGATGTGATATGTCATAATACTTCAGGCTCGCTGGCAGAAGAGTGTCTGGTGATAGAATCACCCAATTCATCTGTGCAAGTTCCTGAGGTTGAAGACAAGGTAGAATTCCAATTAAGAGAAGAACGTTTAGGAACTGAAACAGTCGATGAAGACAATATTCCAACTCAATCTAAGATTTCAAATGAGGTCCAAGAGGAATTTAACACAACTGAGTCACACTCTGAGAAGAATGCAGAAGAAGCTGAAGTTTCTCCTGAATTTGTTGCCGAGAACAAGAACGAGGCTCCTGTAGAGGATTGCGAGGATTCAGATGGAGAATATCTGGAAATTTCCGAACAAGGTATGGATATTTTAAATTTATCTATTGGAGATTGCAAGCATAAGAATGAGGAGATGGGAGAGACAACTGAACTTTCAACAAGCAATGAACACGAAGCGGAAAGACGAGAACCAGATGAAAGCCCATTTGAGCCTATTTTAGGGTTTCAACCACAAACTCAGCAAAAGGAAACTACAATAGTTTTTCAAACTGCAGAAAGTACAGATGAATCGATTTCAGCACCGAGGCAAGAAACCGATACAGAAACTGAAAAATCCAAGAGCAATCCCTCGGATTCCCTAAGTTATACCCAGACAGCTTCATCAACACCCACAGAAACTAAACCATCGACAAATCCAATCGACGAACAGAGTTTAGCAACACTTCCATTCTCCACATTTGGAGGAGAAGATCAAGATTCTCCAGGAAGAACAAGCAATGAATCAATTTCAGAAAATTCAATTGGTCAAATCGAGATGCGTAAATCACCTAGCTTCAATATAGATATCCAAATCGAAGGAAAAACAGGAGAAACAGAGAAAACTCCATTGCTATACCAAATTAAGACAATCGAAGACTTATCAAATCTGCAGGAGATTAGCTTCCCAAATCCAATGGAGAAACGAGTAGTGAAGTTGGGAAGAAGCGACTCAGAGAAATCGAGGCCTTCTTTCCCAGGGTTCGTGAAAGAAAAAGAAGAATCAGGGATGGAATTCAAAGCAATCGATCAAAATAACTTCGTCAACGAGAAGAAGGTAGCGAAAAACTTACCACCGCCATCGCCGATCCGTAAAGGGAAGCGCAGAACGAAATCCCTCATTTTTGGGACCTGCATCTGCTGTGCTACAGCGATCAATTGA 2421 40.27 MGNEMGNNNTSEFREEEKEKAEGPELFLLEGGKNEGEADEVAGFSQKEARPSSGEADKVNGDHHVSEKEEEKNKVFDIEEFQVVSENLHDQTIEDNVVEVKSKENKEMECDSEENRSDKQASSQKEEEEKRGSNLNTTVLSLNEPKLEKTEEKCKDALESSSKNTCHSADCAVPDSEENTNMNQVIDTDRDTNKENDGEKGKGSVINMITHASEDEKSETTSDVNVDQVIDNDGDTDKENDGERGRGSSFNTTTHAPKDPKSEINSDFDSDQVIDTDVDAHKENDEERRKGSNFEMTNSSENPKSEKTSNLDSNQVVRTDWDADKENDEGRGNSSNFDMLIDASKDPNSENSSNLRCSQHESPETNAESLTGSSDDGGTDMEKKKGDLVEPRQCHGYTAPAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVPEVEDKVEFQLREERLGTETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFVAENKNEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTSNEHEAERREPDESPFEPILGFQPQTQQKETTIVFQTAESTDESISAPRQETDTETEKSKSNPSDSLSYTQTASSTPTETKPSTNPIDEQSLATLPFSTFGGEDQDSPGRTSNESISENSIGQIEMRKSPSFNIDIQIEGKTGETEKTPLLYQIKTIEDLSNLQEISFPNPMEKRVVKLGRSDSEKSRPSFPGFVKEKEESGMEFKAIDQNNFVNEKKVAKNLPPPSPIRKGKRRTKSLIFGTCICCATAIN 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3566514 3569730 - MELO3C006492.2.1 Cme06g00565 329714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00565 806 MobiDBLite consensus disorder prediction 318 332 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 540 685 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 295 317 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 51 74 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 455 521 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 333 376 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 733 752 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 1 74 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 574 599 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 600 614 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 95 394 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 95 133 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 145 160 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 231 245 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 260 294 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 377 391 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 463 481 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 482 512 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 10 44 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 615 681 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 540 569 - -
Cme06g00565 806 MobiDBLite consensus disorder prediction 161 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00565 - - - cmo:103483664 1592.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g578 . . . . . . . . . . Cma06g01356 . Car06g01177 . Sed02g1355 . . Bhi01g00747 Tan10g0777 Cmetu06g1274 . Hepe05g1595 . Lcy11g1592 . . . . . . . . . . . Lsi05g01648 . . Cme06g00565 . . . . . . . . . Cmo06g01371 . . . . . . . . . . . . . . . . . . . . . . Csa03g01281 Chy06g00533 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008657 0 1 0 0 0 1 2 1 1 1 1 1 4 1 1 3 1 0 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00565 Cme_Chr06 FPKM 0.0 0.0 0.0 0.183934 0.669364 1.415504 0.978174 0.118618 0.0 0.0