Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00567 ATGCCAGTACGGCAAATGAAAGAGAGCTCCGAGCAGCACCTTGTAATCAAAACCCACTTGCAGAACACTGTTCAAAAGGCTCCAAAATCAACCCAAAATGGCAAAGGTCCGCCGAATCTGGAACACCAGAACATCAAATCTCGAAACCCATCTTCCCCTCCGAGTAAAAACAGGGGTCGGAGAAGGAGCAGAGGTGGCCGGAAATCCGATCAGGGAGAAGTGTTTATGAGACCCAGTTCTCGGCCCTGCACGGTGGCACGTAAACCCGATGAACCTGAATTTAACGCCGGAGCTCTGGTGGCGAGTACTAATCCAAATGGTGGAATCATTAGTGGGATGCAAATGGGTTTTCGTAATTCAAGCAAATCTTTGAGTTTTGCCCCAAGACCTGGATTTGGTCAAGTTGGAACGAAGTGTATTGTAAAAGCAAACCATTTCTTTGCAGAGTTACCAGACAAAGATTTGAATCAATATGATGTTACAATTACTCCTGAAGTGGCATCAAGAACTGTGAACAGAGCCATCATGGCTGAATTGGTGAGATTATACAGAGAATCAGATTTGGGAAAAAGGTTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTATGGAAAGAGTTTACCATCAAGCTTGTGGATGAAGAAGATGGAGTCAGTGGTCCCAAGAGGGAGAGGGAATATAAAGTACTTATTAAGTTCGTTGCACGTGCAAATTTACACCATTTGGGTCAGTTTCTGGCGGGCAAGCGTGCTGATGCTCCACAAGAAGCTCTTCAAATACTGGACATTGTATTGAGAGAGCTTTCATCCAAAAGGTACTGTCCTATAGGGAGATCTTTCTTTTCTCCTGATATTAGATCACCTCAGCGGCTCGGTGATGGGCTAGAATCATGGTGTGGATTTTACCAGAGTATTAGACCTACTCAAATGGGACTGTCTCTGAACATTGATATGGCTTCAGCTGCATTCATTGAGCCTCTCCCTGTCCTTGAGTTTGTTGCTCAGCTTCTAGGGAAAGATGTTTTGTCAAGGCCACTGTCCGACTCTGATCGAGTAAAGATTAAAAAGGCCCTTAGAGGGGTGAAAGTTGAAGTAACACACCGTGGAAATGTTAGGCGGAAGTATCGAGTCTCGGGTCTGACATCACAGCCTACAAGAGAATTAGTATTTCCTGTTGATGACAACTCAACCATGAAGTCAGTTGTTGAATACTTCCAGGAGATGTATGGCTTCACCATTCAGCATGCACATCTCCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGCAAATTATTTGCCAATGGAGGCCTGCAAAATTGTAGGGGGGCAAAGATATACAAAAAGATTGAATGAAAAGCAAATAACAGCACTTCTAAAAGTCACGTGTCAAAGACCTAGAGATCGAGAAAATGACATTTTGCAGACTGTCCAACATAACGCTTATGATAATGATCCTTATGCTAAGGAGTTTGGGATTAAAATAAGTGAAAAACTGGCTTCCGTTGAAGCTAGAATTCTTCCTCCTCCATGGCTAAAATATCATGATACTGGAAAAGAGAAGGATTGCTTGCCTCAAGTGGGTCAATGGAATATGATGAACAAAAAAATGATTAATGGAATGACTGTTAACCGGTGGGCATGTATCAACTTTTCTAGGAGCGTGCAAGAGAGCGTAGCTCGTGGGTTTTGTTCTGAACTTGCTCAGATGTGTCAAGTGTCTGGAATGGAATTCAATCCAGAACCAGTTATTCCAGTATACAACGCGAGGCCAGAACAGGTAGAGAAAGCTTTGAAGCATGTGTATCATGCTTCCATGAACAAGACTAAAGGGAAAGAGTTGGAGCTATTGTTAGCTATTTTACCTGACAATAACGGGTCGCTTTATGGTGATCTTAAGCGTATTTGTGAAACTGATCTTGGTTTAATATCACAATGCTGTCTTACAAAGCACGTGTTCAAGATAAGCAAGCAATACCTTGCTAATGTGTCACTGAAGATCAATGTCAAGATGGGTGGAAGAAACACTGTTCTTCTAGATGCTATCAGCTGCAGGATACCACTTGTGAGTGACATACCTACAATTATATTTGGAGCAGACGTGACCCATCCAGAGAATGGCGAAGATTCCAGCCCTTCAATAGCTGCTGTAGTAGCCTCTCAGGATTGGCCTGAAGTGACAAAATATGCTGGGCTAGTATGTGCTCAAGCTCATAGACAAGAACTTATACAAGACTTGTACAAAACTTGGCAGGATCCTATCCGTGGCACCGTCAGTGGTGGCATGATCAGGGATCTTCTGATTTCGTTTAGGAAAGCAACAGGGCAAAAGCCTCTTAGGATAATATTTTACAGGGACGGCGTGAGCGAAGGACAATTCTATCAAGTATTACTTTATGAGTTGGATGCAATCAGGAAGGCATGTGCTTCTTTAGAACCGAATTACCAACCACCTGTAACATTCATTGTCGTACAAAAGCGACACCACACCCGATTGTTTGCCAACAACTATAGAGATAGAAGTAGCACAGACAAGAGTGGGAACATTTTACCTGGAACCGTAGTCGACTCCAAGATATGCCACCCAACAGAATTTGATTTCTATCTCTGTAGTCATGCTGGAATTCAGGGGACAAGTCGGCCAGCTCACTACCATGTTCTTTGGGATGAAAACAATTTTACCGCAGATGGAATTCAGTCGTTAACGAACAATCTTTGCTACACGTATGCAAGATGTACACGTTCAGTTTCTGTCGTCCCTCCAGCATACTATGCACATTTAGCTGCATTCCGAGCTCGATTCTACATGGAACCAGAGATGCAGGAGAATGGCTCAGCTGGTCGTTCGGCCAAGAGTACACGTGTTATAGGAGAATCTGGGGTTCGTCCTTTGCCAGCTCTAAAGGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 2955 43.38 MPVRQMKESSEQHLVIKTHLQNTVQKAPKSTQNGKGPPNLEHQNIKSRNPSSPPSKNRGRRRSRGGRKSDQGEVFMRPSSRPCTVARKPDEPEFNAGALVASTNPNGGIISGMQMGFRNSSKSLSFAPRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYRESDLGKRLPAYDGRKSLYTAGELPFVWKEFTIKLVDEEDGVSGPKREREYKVLIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRYCPIGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLEFVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNAYDNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNPEPVIPVYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPIRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNYRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSAGRSAKSTRVIGESGVRPLPALKENVKRVMFYC 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3593887 3601867 + MELO3C006494.2.1 Cme06g00567 329716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00567 984 CDD PAZ_argonaute_like 333 447 - -
Cme06g00567 984 SUPERFAMILY PAZ domain 328 488 IPR036085 GO:0005515
Cme06g00567 984 SMART DUF1785_2 281 333 IPR014811 -
Cme06g00567 984 SMART Piwi_a_2 622 943 IPR003165 GO:0003676
Cme06g00567 984 ProSiteProfiles PAZ domain profile. 334 448 IPR003100 GO:0005515
Cme06g00567 984 ProSiteProfiles Piwi domain profile. 622 943 IPR003165 GO:0003676
Cme06g00567 984 PANTHER PROTEIN ARGONAUTE 10 57 983 - -
Cme06g00567 984 Pfam Argonaute linker 1 domain 282 331 IPR014811 -
Cme06g00567 984 MobiDBLite consensus disorder prediction 21 88 - -
Cme06g00567 984 Gene3D - 691 984 IPR036397 GO:0003676
Cme06g00567 984 Pfam Piwi domain 623 942 IPR003165 GO:0003676
Cme06g00567 984 SMART PAZ_2_a_3 338 470 IPR003100 GO:0005515
Cme06g00567 984 Pfam N-terminal domain of argonaute 138 272 IPR032474 -
Cme06g00567 984 CDD Piwi_ago-like 492 942 IPR045246 -
Cme06g00567 984 Gene3D - 512 685 - -
Cme06g00567 984 Pfam Argonaute linker 2 domain 474 520 IPR032472 -
Cme06g00567 984 Pfam PAZ domain 360 464 IPR003100 GO:0005515
Cme06g00567 984 Pfam Mid domain of argonaute 531 608 IPR032473 -
Cme06g00567 984 Gene3D paz domain 327 452 - -
Cme06g00567 984 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 57 983 - -
Cme06g00567 984 MobiDBLite consensus disorder prediction 21 54 - -
Cme06g00567 984 SUPERFAMILY Ribonuclease H-like 610 943 IPR012337 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01280 Cme-Chr2:18692973 Cme06g00567 Cme-Chr6:3593887 0 dispersed
Cme05g00325 Cme-Chr5:2393171 Cme06g00567 Cme-Chr6:3593887 1.18E-161 dispersed
Cme06g00567 Cme-Chr6:3593887 Cme12g02023 Cme-Chr12:25785423 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00567 K11593 - csv:101221352 1947.94