Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00569 ATGCAGCTTCTTAACTCTGAAGAAACGGTCGCCGACTCCTCGGAAACCGGTCTTGTGGAGTCAAGAAATTTGAAATCTTCTGAGTTGGCTTCGTTTGAGGATGACAATAGAAACGATGCTGATGATTCGGTTCTTGATGTATCGGGGAGAAACCTGGATTCCAATTTCTTGGAGGGTTCCAGCAGCTCAGTGAAGGGTCTGTATGTTTTTCGGAATGCGTTCAATTTGATCCCGAAATCAGTTGGTGACTTTAGAGAATTGAGAATGCTTAAGTTCTTTGGAAACGAGATTAACTTGTTTCCGTCAGAATTGAAGAACTTTGCGGGGTTAGAATGCTTGCAGGTGAAGTTATCCTCACCGGGTTTTGGTGGTTTATCATTGCACAAACTGAAGGGTCTGAAGGAGCTTGAGCTATCGAAGATTCCTCCTAAGCCTTCCTCGTTTCCAATTCTTAGCGAGATCGCTGGCCTTAAGTGCTTGACTAAGCTCTCAGTTTGTCACTTTTCTATTAGATTTCTTCCTCCTGAAATTGGCTGCCTGAATAGTTTGGAGTATCTGGATCTCTCATTTAATAAGCTGAAGAGCCTTCCGGCAGAAATAGGCTATTTGAATTCCTTGATATCCTTGAGAGTTGCCAATAACAAATTGGTGGAACTGCCTCCTGCTTTGTCTTCCCTGCAAAAGCTGGAGAACCTGGATCTGTCAAGTAATAGGTTAACGTCATTGGGGTCTCTTGAACTTGTATCTATGCATAGCCTTAGAAACTTGAATTTACAGTACAATAAATTTCTGAAAAGCTGTCAGATACCCTCCTGGATATGCTATAATTTTGAAGGAAATCTTGAAGATGATACAACCAATGAAGAATGGATTAGTTCTACAGTTGAAATGGATGTTTATGAAGCCACCGTTCAAGACAATGAGAATAGTTTTCCTCTTAAAGGTACTCGTAATCTTTCATCAAACCTATTAATGGGACCTTCAACGAATAGTAGATCCTTTGCATCTAAAAGATCAGGTAAGCGATGGCGGAGACGGCATTATTTACAGCAGAAAGCTCGCCAGGAACGTTTGAACAGCAGCAGGAAGTGGAAAGGAGTAGATCATCATACTGAAGTGAAGATCCACGAAAATCATGAACCTGAGAGGCTTGATTCTGCTCCTATTTCTGAAACTACAGTTGAAGATTCATCGGCTATTGATGAATTATTTGATGGTAAAGAAACATGTGATGTGGGAGCTGAAAGGGAAAATCATATTGAGAGCCATGAGAATGACAATTTTGATCCCAAAAAGGAATTCTCAGTGGAGGATTGTTCAAGCATCTGTGATGCTGCTGCAGAAACAATGACAAGGGATGAAAATGAATGTTGTGAGACTAGCAAGACTTTGCCACCGACAGGAAATGGAGCACATGACCTAGAAGGGTCATCTTCACAAGTATCAAAGGATAATGCTAAGTTGAAAAGATATTCTGAGAGGGAACTTGATAATCCTAAACCTTGCAAGTCAAGAAAGCCAGTTGAAGACAGCTCAAGTTTATCTTGCAAGTACAATAGTACCTCTTTTTGCAATGTGGAGGATTATTTGCCTGATGGATTTTATGATGCTGGACGTGATCGCCCCTTCATGCCATTAAGGAATTATGAGCAAAATTTCCATCTTGATTCACGTGAAGTGATTATCGTTAACAGGGAACACGATGAAGTATTAGATTCTATAACAATAGCTGCCAAGTCATTGGTACTACGTCTAAAGCAGATTAACCACCTAACCCAAGAAAGAGATCAAGTTATTGATGATGTGTATATTGCACAGTTACTTGCTTTATTTGTATCTGATCATTTTGGAGGCAGTGATAGGAGTGCAATGGTTGAGAAAACACGGAGAGCTGTTTCTGGTTCAAAGTATCAAAAGCCTTTTGTCTGCACCTGCTCAACTGGAGATCGGGATAATCTTACTTCGTCCACCAAATTGACGGTGGATAATTATGAGGATATTCTTTTTACCAATATCTGTGAGAAGTCTCTTCGTTCTATTAAAGCTAGTCGAAATTCCATCATAGTTCCTCTGGGAGCTTTGCAGTTTGGTGTGTGCAGACATAGAGCTTTGCTACTTAAGTATTTGTGTGATCGTATGGAACCTCCAATACCTTGCGAGCTTGTGAGAGGTTACTTGGATTTTTTGCCTCATGCCTGGAATGTCATCTTAGTGAAAAGAGGTAATACTTTGGTTCGAATGGTTGTTGATGCATGCCGACCAAATGATATACGAGAAGAAGCTGATCCCGAATATTTTTGTAGGTATATACCTCTCAGTCGTGCCAAACTTCCTATTTCTTTTGGGATGACATCCAGTCCAGGGATTTCTTTTCCATCTCTTTCCAATTGTGATGAGATTGAGAATGCTCCTTCTAGTTCTGTAATAAAATGCAAACTTGCGTCAGTTGAGGCTGCAGCTAAGTTACGGAAACGTGAAGTTTGTGAATCTTCATTTGAAGAGATAAGAAACTTTGAATTCAGTTGCTTAGGTGAAGTCAGAATTCTGGGTGCTTTGAAACACTCATGCATAGTACAGATGTATGGACATCAGATATCTTCTGAATGGATTCCTTCTGAAAATGGAAAACCAAAGCGTCGATTACTTCGGTCTGCAATTTTCTTAGAGCATGTTAAAGGGGGATCTTTGAAGGGCTACATGGACAAGTTGTACAAAGCTGGGAAGAAACATATTCCAATGGATTTGGCATTGCATGTAGCTCGAGATGTTGCAAGTGCTTTGGTAGAGCTGCATTCAAAACACATCATTCATCGAGACATCAAAAGTGAAAATATTTTGATGGATTTTGATGAAAAATCTGATGGAGTTCCCATCGTTAAGCTTTGTGATTTTGATAGAGCAGTGCCCCTTCGATCTTTATTGCACACTTGTTGTATTGCTCATACTGGAATACCTCCTCCTGATGTTTGTGTTGGAACACCCCGATGGATGGCTCCAGAAGTTCTACGAGCAATGCATACACCAAATGTTTATGGACTGGTATGTAGATTAGCTTTTCAAAATTCTCTTGGATGTTCCAGGCTTTCAGATCAAGGTTTCTTTTTGACACTAGGGAATCATTCTTAG 3126 40.28 MQLLNSEETVADSSETGLVESRNLKSSELASFEDDNRNDADDSVLDVSGRNLDSNFLEGSSSSVKGLYVFRNAFNLIPKSVGDFRELRMLKFFGNEINLFPSELKNFAGLECLQVKLSSPGFGGLSLHKLKGLKELELSKIPPKPSSFPILSEIAGLKCLTKLSVCHFSIRFLPPEIGCLNSLEYLDLSFNKLKSLPAEIGYLNSLISLRVANNKLVELPPALSSLQKLENLDLSSNRLTSLGSLELVSMHSLRNLNLQYNKFLKSCQIPSWICYNFEGNLEDDTTNEEWISSTVEMDVYEATVQDNENSFPLKGTRNLSSNLLMGPSTNSRSFASKRSGKRWRRRHYLQQKARQERLNSSRKWKGVDHHTEVKIHENHEPERLDSAPISETTVEDSSAIDELFDGKETCDVGAERENHIESHENDNFDPKKEFSVEDCSSICDAAAETMTRDENECCETSKTLPPTGNGAHDLEGSSSQVSKDNAKLKRYSERELDNPKPCKSRKPVEDSSSLSCKYNSTSFCNVEDYLPDGFYDAGRDRPFMPLRNYEQNFHLDSREVIIVNREHDEVLDSITIAAKSLVLRLKQINHLTQERDQVIDDVYIAQLLALFVSDHFGGSDRSAMVEKTRRAVSGSKYQKPFVCTCSTGDRDNLTSSTKLTVDNYEDILFTNICEKSLRSIKASRNSIIVPLGALQFGVCRHRALLLKYLCDRMEPPIPCELVRGYLDFLPHAWNVILVKRGNTLVRMVVDACRPNDIREEADPEYFCRYIPLSRAKLPISFGMTSSPGISFPSLSNCDEIENAPSSSVIKCKLASVEAAAKLRKREVCESSFEEIRNFEFSCLGEVRILGALKHSCIVQMYGHQISSEWIPSENGKPKRRLLRSAIFLEHVKGGSLKGYMDKLYKAGKKHIPMDLALHVARDVASALVELHSKHIIHRDIKSENILMDFDEKSDGVPIVKLCDFDRAVPLRSLLHTCCIAHTGIPPPDVCVGTPRWMAPEVLRAMHTPNVYGLVCRLAFQNSLGCSRLSDQGFFLTLGNHS 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3618450 3623562 - MELO3C006495.2.1 Cme06g00569 329718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00569 1041 SMART LRR_typ_2 226 249 IPR003591 -
Cme06g00569 1041 SMART LRR_typ_2 250 276 IPR003591 -
Cme06g00569 1041 SMART LRR_typ_2 203 225 IPR003591 -
Cme06g00569 1041 SMART LRR_typ_2 180 201 IPR003591 -
Cme06g00569 1041 Pfam Protein kinase domain 807 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00569 1041 MobiDBLite consensus disorder prediction 460 485 - -
Cme06g00569 1041 PANTHER BNAC08G43810D PROTEIN 65 1015 - -
Cme06g00569 1041 PRINTS Leucine-rich repeat signature 226 239 - -
Cme06g00569 1041 PRINTS Leucine-rich repeat signature 183 196 - -
Cme06g00569 1041 MobiDBLite consensus disorder prediction 1 22 - -
Cme06g00569 1041 Pfam Leucine rich repeat 206 263 IPR001611 GO:0005515
Cme06g00569 1041 Pfam Ethylene-responsive protein kinase Le-CTR1 672 750 - -
Cme06g00569 1041 SMART LRR_sd22_2 180 205 - -
Cme06g00569 1041 SMART LRR_sd22_2 226 247 - -
Cme06g00569 1041 ProSitePatterns Serine/Threonine protein kinases active-site signature. 935 947 IPR008271 GO:0004672|GO:0006468
Cme06g00569 1041 SMART serkin_6 794 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00569 1041 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 65 1015 - -
Cme06g00569 1041 SUPERFAMILY Protein kinase-like (PK-like) 791 1006 IPR011009 -
Cme06g00569 1041 MobiDBLite consensus disorder prediction 322 336 - -
Cme06g00569 1041 MobiDBLite consensus disorder prediction 322 346 - -
Cme06g00569 1041 MobiDBLite consensus disorder prediction 486 507 - -
Cme06g00569 1041 SUPERFAMILY RNI-like 57 272 - -
Cme06g00569 1041 ProSiteProfiles Leucine-rich repeat profile. 182 203 IPR001611 GO:0005515
Cme06g00569 1041 SMART LRR_bac_2 203 222 - -
Cme06g00569 1041 SMART LRR_bac_2 180 199 - -
Cme06g00569 1041 SMART LRR_bac_2 226 245 - -
Cme06g00569 1041 ProSiteProfiles Protein kinase domain profile. 794 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00569 1041 Gene3D Ribonuclease Inhibitor 20 290 IPR032675 -
Cme06g00569 1041 Gene3D Transferase(Phosphotransferase) domain 1 804 1011 - -
Cme06g00569 1041 MobiDBLite consensus disorder prediction 458 514 - -
Cme06g00569 1041 ProSiteProfiles Leucine-rich repeat profile. 228 249 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00569 - - - csv:101218031 1936.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00569 Cme-Chr6:3618450 Cme10g00573 Cme-Chr10:3669809 5.95E-07 dispersed
Cme12g00688 Cme-Chr12:12603941 Cme06g00569 Cme-Chr6:3618450 1.72E-06 dispersed
Cme06g00569 Cme-Chr6:3618450 Cme03g02003 Cme-Chr3:27752940 2.00E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64939 PF00069 Pkinase 2.60E-22 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00569 Cme_Chr06 FPKM 1.666085 1.830304 0.0 0.0 7.130025 6.121847 6.044409 0.435795 0.737422 0.0