Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00570 ATGCTTGCAACACTCAAAGCGGAAGAACAAAGCCAACAGCTACAGCTTGTAGAGCGTGAAGATATTGAGGATGAAGACGATTTGTTTGAAGCGATTGATAAACTGACTTCTCATGGAATTAATGCTGGAGACGTGAAGAAGCTTCAGGACGCAGGGATATACACCTGCAACGGTTTGATGATGCACACGAAGAAGCACCTGACCGGGATAAAAGGCTTATCCGAGGCGAAGGTTGATAAGATATGCGAAGCTGCCGATAAGCTAGTGAATTTTGGTTATATCACTGGAAGCGATGCTCTGCTCAAGAGAAAGTCCGTGGTTCGCATTACCACTGGAAGCCAGGCTCTCGATGAACTCTTAGGAGGTGGAATTGAAACACTAGCAATCACGGAAGCTTTTGGAGAATTCAGGTCCGGGAAAACGCAACTCGCGCATACTCTATGCGTCTCTACGCAGCTTCCTACCAGCATGCGGGGAGGGAATGGAAAGGTTGCATACATTGACACTGAAGGCACTTTCCGACCTGATCGAATTGTGCCCATAGCTGAAAGATTTGGCATGGACCCAGGAGCTGTCCTTGACAATATCATATATGCTCGTGCCTACACCTACGAACACCAGCATAACCTTCTGCTCGGTCTTGCTGCAAAAATGTCTGAAGAGCCATTTAAGCTTCTGATTGTCGACTCTATCATCGCACTTTTTCGAGTGGATTTCACCGGAAGAGGAGAACTTGCAGAGCGCCAGCAAAAATTGGCACAGATGCTGTCCCGATTAACTAAAATTGCAGAAGAGTTCAATGTAGCAGTTTACATGACCAACCAAGTCGTTGCAGACCCAGGTGGAGGAGTGTTTGTTTCAGATCCCAAAAAACCAGCAGGAGGCCATGTTCTTGCCCATGCCGCTACAGTTAGATTGATGTTCAGGAAAGGCAAAGGTGAACAACGGATCTGCAAGGTGTTCGATGCCCCTAATTTGCCAGAGTCTGAAGCTATATCCTAA 1002 46.91 MLATLKAEEQSQQLQLVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAADKLVNFGYITGSDALLKRKSVVRITTGSQALDELLGGGIETLAITEAFGEFRSGKTQLAHTLCVSTQLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQHNLLLGLAAKMSEEPFKLLIVDSIIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVVADPGGGVFVSDPKKPAGGHVLAHAATVRLMFRKGKGEQRICKVFDAPNLPESEAIS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3625424 3631417 + MELO3C006496.2.1 Cme06g00570 329719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00570 333 ProSiteProfiles RecA family profile 1. 105 276 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Cme06g00570 333 SUPERFAMILY Rad51 N-terminal domain-like 24 91 IPR010995 GO:0000166
Cme06g00570 333 ProSiteProfiles RecA family profile 2. 282 333 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Cme06g00570 333 PANTHER MEIOTIC RECOMBINATION PROTEIN DMC1-LIKE PROTEIN 15 332 - -
Cme06g00570 333 TIGRFAM recomb_DMC1: meiotic recombinase Dmc1 32 332 IPR011940 GO:0000150|GO:0003677|GO:0005634|GO:0007131
Cme06g00570 333 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 15 332 - -
Cme06g00570 333 CDD Rad51_DMC1_radA 109 331 IPR033925 GO:0003677
Cme06g00570 333 SMART AAA_5 126 312 IPR003593 -
Cme06g00570 333 Pfam Rad51 92 332 IPR013632 -
Cme06g00570 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 330 IPR027417 -
Cme06g00570 333 Gene3D - 9 91 - -
Cme06g00570 333 PIRSF Rad51 18 333 IPR016467 -
Cme06g00570 333 Gene3D - 92 332 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00570 K10872 DMC1; meiotic recombination protein DMC1 - csv:101221817 650.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00339 Cme-Chr2:2783638 Cme06g00570 Cme-Chr6:3625424 9.02E-102 dispersed
Cme05g01369 Cme-Chr5:22740185 Cme06g00570 Cme-Chr6:3625424 3.29E-18 dispersed
Cme06g00273 Cme-Chr6:1655018 Cme06g00570 Cme-Chr6:3625424 9.84E-21 dispersed
Cme06g00570 Cme-Chr6:3625424 Cme11g01756 Cme-Chr11:25731634 8.93E-12 dispersed
Cme08g02257 Cme-Chr8:29421207 Cme06g00570 Cme-Chr6:3625424 4.62E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g564 . . . . . Bpe14g01213 . . . . Cma06g01366 Cma14g01751 Car06g01181 . Sed12g0976 Cpe08g00289 Cpe03g01470 Bhi01g00755 Tan10g0784 Cmetu06g1587 . Hepe05g1591 . . . . . . . . . . . . Cone4ag0274 Lsi05g01643 . . Cme06g00570 . Blo07g00234 Bda11g00600 . . . Bma02g00822 Bma06g01573 . Cmo06g01378 Cmo14g01788 . . . . . . . . . . . . . Cla05g00504 Cam05g0555 Cec05g0567 Cco05g0565 Clacu05g0551 Cmu05g0523 Cre05g0592 . Csa03g01286 Chy06g00540 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010242 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00570 Cme_Chr06 FPKM 15.49348 17.051363 15.508463 13.706872 25.751284 28.857267 20.785202 21.993153 21.891834 22.584457