Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00580 ATGGGCAATGCAGATTTTGAATGCCCTCATCGAGTAGCCATTCCTCCCAAGAAGCCCTTCTTAGACTCCTTATCTTCCAATCTCAAAGAAACCTTCTTCCCTGATGACCCTTTCAAACAATTCAAAAACCAACCTTTACCCACACAAATCTTTCTATGGCTTAAATACTTCATTCCCTTCCTCAGTTGGGCTCCTCATTACACTTTGGACTTCTTTAAAGCTGACCTCGTTGCTGGTATCACCATCGCTAGTTTAGCTGTCCCTCAGGGTATTAGCTATGCCAATCTCGCTAGCATTCCTCCTATCATCGGACTTTATTCGAGTTTCGTACCTCCGTTGATATACGCCATGCTTGGAAGCTCGAAAGATGTAGCGGTGGGGACAGTGGCGGTAGCATCGTTGCTTATGTCTGCCATGTTGGGAAAGGAAGTCAACCCCGTGGAGCATCCGAAGCAATATGTTCAGTTGGTTTTCACTGCCACTTTCTTCGCAGGAGTTTTTCAAGCTTCTCTTGGATTTCTAAGATTAGGGCTTATTGTGGACTTTTTGTCGCATGCAACAATAGTAGGGTTCATGGGTGGTGCAGCAACGGTGGTCTGTCTTCAGCAATTAAAAGGCATAACCGGATTGGTTCATTTTACGCATGAGACTGATATTGTATCCGTTATGCGCTCTCTTTTTACTCAACTTCACAAGTGGAGATGGGAAAGTATTGTATTGGGTTGTTGTTTTCTCTTCTTTCTCCTCCTCACAAGATATTTGAGCAAGAAGAAACCAATCTTCTTTTGGATAAGTGCATTGGCGCCTTTGACTTCGGTAATCTTGGGAAGTCTTCTCGTTTACTTAACCCACGCTGAAAAACATGGCGTTCAAGTGATTGGGAGTTTGAAGAAAGGGTTGAATCCCCCTTCTGTATCTGATTTAGTATTTGGATCCCCTCATCTCGCCATTACTATCAAAACAGGGATCATCATCGGAATCATAGGCCTCGCTGAAGGGGTTGCAGTGGGAAGAAGTTTTGCTGCATTTAAGAATTACCACATTGATGGAAACAAGGAGATGATAGCATTTGGGATGATGAACATTGTTGGTTCTTGCACTTCTTGCTACCTTACTGCAGGCCCTTTCTCGAGGACTGCAGTGAATTTCAATGCAGGATGTAAAACTGCAGTTTCGAATATTGTCATGGCAATTGCTCTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCACTATACACCCCTGGTTGTGCTTTCTGCCATAATCATCACTGCTATGCTTGGCCTAATCAACTACGAAGAAGTCATCCACCTTTGGAAAATCGACAAATTTGACTTTGTCGTCTGCCTTGGTGCATATATCGGTGTTGTCTTTGGCAGTGTTGAAACAGGCTTGATCGTTGCGATTACACTCTCTTTGTTAAGGGTGCTTCTCATCATGGCGAGGCCAAGAACTTTAGTACTAGGCAACATTCCCAACTCCACAATTTACAGAAGCGTTGATCAATACCCAACAGCCAACCGTGTGCCTGGAATTCTCATCCTTCAATTGGAGGCCCCAATCTACTTTGCCAACTCAAACTACCTAAGAGAAAGGCTTTCGAGGTGGATTACAGACGAAGAAGAGAGGATAAAAACATCAGGAGAAACCAGCTTGCAGTACATAATTCTAGACATGTCCGGCGTTAGTAGCATTGACTCAAGTGGAATCAGCATGCTTGAAGAGGTTAAGAAGAGTACTGAAAGAAAGGGTCTCAAACTTGTGCTTTGCAATCCAAGAAGTGAAGTGATAAAAAAGTTAAACGAGGTGAAGTTCATCGAGGCGATCGGACAAGAATGGATCTATCTTACAGTGGGAGAGGCTGTAACAGCTTGCAACTTCATGCTCCACACTTGCAAGCCAAATCATGCTGCTGCTGAACTAAATTCACTCGTCTAG 1941 43.59 MGNADFECPHRVAIPPKKPFLDSLSSNLKETFFPDDPFKQFKNQPLPTQIFLWLKYFIPFLSWAPHYTLDFFKADLVAGITIASLAVPQGISYANLASIPPIIGLYSSFVPPLIYAMLGSSKDVAVGTVAVASLLMSAMLGKEVNPVEHPKQYVQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGITGLVHFTHETDIVSVMRSLFTQLHKWRWESIVLGCCFLFFLLLTRYLSKKKPIFFWISALAPLTSVILGSLLVYLTHAEKHGVQVIGSLKKGLNPPSVSDLVFGSPHLAITIKTGIIIGIIGLAEGVAVGRSFAAFKNYHIDGNKEMIAFGMMNIVGSCTSCYLTAGPFSRTAVNFNAGCKTAVSNIVMAIALMITLLFLTPFFHYTPLVVLSAIIITAMLGLINYEEVIHLWKIDKFDFVVCLGAYIGVVFGSVETGLIVAITLSLLRVLLIMARPRTLVLGNIPNSTIYRSVDQYPTANRVPGILILQLEAPIYFANSNYLRERLSRWITDEEERIKTSGETSLQYIILDMSGVSSIDSSGISMLEEVKKSTERKGLKLVLCNPRSEVIKKLNEVKFIEAIGQEWIYLTVGEAVTACNFMLHTCKPNHAAAELNSLV 646
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 3732248 3737402 + MELO3C006505.2.1 Cme06g00580 329729
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00580 646 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
Cme06g00580 646 SUPERFAMILY SpoIIaa-like 506 626 IPR036513 -
Cme06g00580 646 Pfam Sulfate permease family 72 451 IPR011547 GO:0016021
Cme06g00580 646 Pfam STAS domain 504 622 IPR002645 -
Cme06g00580 646 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271|GO:0008272
Cme06g00580 646 PANTHER BNAA04G05880D PROTEIN 4 641 IPR030311 GO:0008272|GO:0009507|GO:0015116
Cme06g00580 646 TIGRFAM sulP: sulfate permease 59 622 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme06g00580 646 Gene3D STAS domain 483 628 IPR036513 -
Cme06g00580 646 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
Cme06g00580 646 PANTHER SULFATE TRANSPORTER 4 641 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01332 Cme-Chr2:19261617 Cme06g00580 Cme-Chr6:3732248 0 dispersed
Cme06g00580 Cme-Chr6:3732248 Cme10g01488 Cme-Chr10:18577803 0 dispersed
Cme01g00256 Cme-Chr1:1871896 Cme06g00580 Cme-Chr6:3732248 0 transposed
Cme02g01334 Cme-Chr2:19266865 Cme06g00580 Cme-Chr6:3732248 3.62E-30 transposed
Cme07g01742 Cme-Chr7:22891561 Cme06g00580 Cme-Chr6:3732248 2.70E-174 transposed
Cme09g00573 Cme-Chr9:5889574 Cme06g00580 Cme-Chr6:3732248 1.36E-96 transposed
Cme01g02045 Cme-Chr1:29209263 Cme06g00580 Cme-Chr6:3732248 1.35E-168 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00580 K17471 - csv:101203205 1212.98