Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00581 ATGAAAACCTCAACCTCCCTTCTCCCAAGTTCTCTCCTCCTCGTCTCCATCTTCATCCTCCTCTTCCAACCTTCCCATCAGCAAACTCCGTCGCCATTTCTCCCCAACCCCAGACTTCTTAAGGCTTATATCGCTCTCCAAGCTTGGAAACATGCCATCACTGCAGACCCAGCTAACTTCACTGCCAATTGGTATGGCCCCAACGTTTGCAACTACACCGGCGTTTTCTGCGCCCCCGCCCTCGACGACTCCGACATCCGCACTGTCGCCGGGATCGACCTCAACCATGCTAACATCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTGACCGACCTTGCGCTGTTTCACATCAACTCCAATCGCTTCTGCGGCACCATCCCCGATTCCTTCCGGTGCCTCACTCTCCTCTTTGAACTCGATATCAGCAACAATGACTTCTCCGGGGAATTCCCCTCTGTAATTCTCTCTCTCCCAGCTCTCAAATTCCTCGACGTTCGATTCAACAAATTCAGCGGCGATCTCCCTTCTTCTCTGTTTGACTTGAAACTCGACGCTCTGTTCATCAACAACAACGATTTCAAATTTTCCTTACCGGAAAACATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAATATCAATGGCTGCCTCCCCTCTAGTATATCAAATATGAACACCACACTCAATGAAATTATAATCACGAGTAGTGGGTTGATTGGGTGTTTGCCGCCGGAAATCGGGTCGTTGAGAAATCTAACTGTCTTCGACGTTAGTGATAATAATCTCGTCGGACCGTTACCTGAGACAATGGCTGGAATGAAGAAATTGGAGCAGCTAAATGTGGCACATAACCAATTATCCGGCGAAATTCCGGCGAGTATTTGCTCGTTGCCGAAATTGCAAAACTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGCCGGTTTGCTTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGATAGGCCATTCCAACGTTCGCCGGAGGAATGCAAAGCTTTCTACTCTTACCCTGTTGATTGCGGCGTCTTTGGATGTACCCTTCGGCCACCACCACCGCCACCGCCACCTTATTAG 1122 49.55 MKTSTSLLPSSLLLVSIFILLFQPSHQQTPSPFLPNPRLLKAYIALQAWKHAITADPANFTANWYGPNVCNYTGVFCAPALDDSDIRTVAGIDLNHANISGTLPDDLGLLTDLALFHINSNRFCGTIPDSFRCLTLLFELDISNNDFSGEFPSVILSLPALKFLDVRFNKFSGDLPSSLFDLKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSISNMNTTLNEIIITSSGLIGCLPPEIGSLRNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPPVCLKLQASDDQKNCLPDRPFQRSPEECKAFYSYPVDCGVFGCTLRPPPPPPPPY 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3740501 3741640 + MELO3C006506.2.1 Cme06g00581 329730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00581 373 Pfam Leucine rich repeat 231 290 IPR001611 GO:0005515
Cme06g00581 373 Pfam Leucine rich repeat N-terminal domain 45 77 IPR013210 -
Cme06g00581 373 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 21 369 - -
Cme06g00581 373 Gene3D Ribonuclease Inhibitor 42 208 IPR032675 -
Cme06g00581 373 SUPERFAMILY L domain-like 43 323 - -
Cme06g00581 373 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 21 369 - -
Cme06g00581 373 Gene3D Ribonuclease Inhibitor 209 344 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00581 - - - cmo:103483684 721.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00299 Cme-Chr1:2243543 Cme06g00581 Cme-Chr6:3740501 2.37E-137 dispersed
Cme02g01330 Cme-Chr2:19221068 Cme06g00581 Cme-Chr6:3740501 1.06E-152 dispersed
Cme05g02020 Cme-Chr5:28631157 Cme06g00581 Cme-Chr6:3740501 7.89E-92 dispersed
Cme06g00581 Cme-Chr6:3740501 Cme11g02178 Cme-Chr11:29123538 6.62E-129 dispersed
Cme07g00332 Cme-Chr7:2123243 Cme06g00581 Cme-Chr6:3740501 6.33E-78 dispersed
Cme06g00581 Cme-Chr6:3740501 Cme05g01968 Cme-Chr5:28235872 8.51E-159 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g543 . . . . . . . . . . Cma06g01378 Cma14g01740 Car06g01193 Car14g01568 Sed02g1338 Cpe08g00278 Cpe03g01458 Bhi01g00768 Tan10g0798 Cmetu11g1491 . . . Lcy11g1575 . . . . . . . . . . Cone4ag0264 Lsi05g01631 . . Cme06g00581 . . Bda11g00593 . . . . . . Cmo06g01390 Cmo14g01778 . . . . . . . . . . . . . Cla05g00515 Cam05g0566 Cec05g0578 Cco05g0576 Clacu05g0563 Cmu05g0534 Cre05g0603 . Csa03g01297 Chy06g00552 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g01968 CCT 72 240 Leucine-rich Repeat extension Gene Families AT1G62440 72.2 2.6e-44 177.6
Cme02g01330 CCT 54 224 Leucine-rich Repeat extension Gene Families AT1G62440 70.2 1.2e-41 168.7
Cme02g01330 CCT 18 396 Leucine-rich Repeat extension Gene Families AT4G13340 76.1 6.5e-69 259.2
Cme05g01968 CCT 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 72.2 2.0e-65 247.7
Cme06g00581 . 30 361 Leucine-rich Repeat extension Gene Families AT4G13340 58.5 1.7e-40 164.9
Cme11g02177 . 14 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 1.7e-40 164.9
Cme11g02179 . 17 211 Leucine-rich Repeat extension Gene Families AT4G13340 57.4 2.2e-40 164.5
Cme11g02180 . 11 222 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 2.2e-40 164.5
Cme11g02178 . 38 225 Leucine-rich Repeat extension Gene Families AT4G13340 57.4 3.5e-38 157.1
Cme05g01968 CCT 47 419 Leucine-rich Repeat extension Gene Families AT3G24480 75.5 1.4e-75 280.8
Cme02g01330 CCT 27 391 Leucine-rich Repeat extension Gene Families AT3G24480 76.8 7.5e-74 275.0
Cme06g00581 . 30 361 Leucine-rich Repeat extension Gene Families AT3G24480 55.5 3.2e-40 163.3
Cme11g02180 . 23 397 Leucine-rich Repeat extension Gene Families AT3G24480 50.7 4.1e-40 162.9
Cme11g02177 . 31 225 Leucine-rich Repeat extension Gene Families AT3G24480 52.6 1.2e-39 161.4
Cme11g02179 . 17 211 Leucine-rich Repeat extension Gene Families AT3G24480 52.6 1.2e-39 161.4
Cme11g02178 . 38 400 Leucine-rich Repeat extension Gene Families AT3G24480 51.5 5.0e-38 156.0
Cme06g00581 . 32 366 Leucine-rich Repeat extension Gene Families AT3G22800 71.7 6.4e-59 225.3
Cme01g00299 . 39 371 Leucine-rich Repeat extension Gene Families AT3G22800 60.8 2.5e-39 160.2
Cme02g01330 CCT 64 392 Leucine-rich Repeat extension Gene Families AT3G22800 62.8 9.7e-39 158.3
Cme06g00581 . 20 362 Leucine-rich Repeat extension Gene Families AT5G25550 65.5 1.9e-41 167.2
Cme02g01330 CCT 38 396 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 3.6e-40 162.9
Cme05g01968 CCT 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 60.8 6.8e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00581 Cme_Chr06 FPKM 23.143835 25.836626 26.338108 27.268944 25.257538 23.382391 27.282156 31.522137 31.708437 33.854809