Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00581 ATGAAAACCTCAACCTCCCTTCTCCCAAGTTCTCTCCTCCTCGTCTCCATCTTCATCCTCCTCTTCCAACCTTCCCATCAGCAAACTCCGTCGCCATTTCTCCCCAACCCCAGACTTCTTAAGGCTTATATCGCTCTCCAAGCTTGGAAACATGCCATCACTGCAGACCCAGCTAACTTCACTGCCAATTGGTATGGCCCCAACGTTTGCAACTACACCGGCGTTTTCTGCGCCCCCGCCCTCGACGACTCCGACATCCGCACTGTCGCCGGGATCGACCTCAACCATGCTAACATCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTGACCGACCTTGCGCTGTTTCACATCAACTCCAATCGCTTCTGCGGCACCATCCCCGATTCCTTCCGGTGCCTCACTCTCCTCTTTGAACTCGATATCAGCAACAATGACTTCTCCGGGGAATTCCCCTCTGTAATTCTCTCTCTCCCAGCTCTCAAATTCCTCGACGTTCGATTCAACAAATTCAGCGGCGATCTCCCTTCTTCTCTGTTTGACTTGAAACTCGACGCTCTGTTCATCAACAACAACGATTTCAAATTTTCCTTACCGGAAAACATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAATATCAATGGCTGCCTCCCCTCTAGTATATCAAATATGAACACCACACTCAATGAAATTATAATCACGAGTAGTGGGTTGATTGGGTGTTTGCCGCCGGAAATCGGGTCGTTGAGAAATCTAACTGTCTTCGACGTTAGTGATAATAATCTCGTCGGACCGTTACCTGAGACAATGGCTGGAATGAAGAAATTGGAGCAGCTAAATGTGGCACATAACCAATTATCCGGCGAAATTCCGGCGAGTATTTGCTCGTTGCCGAAATTGCAAAACTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGCCGGTTTGCTTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGATAGGCCATTCCAACGTTCGCCGGAGGAATGCAAAGCTTTCTACTCTTACCCTGTTGATTGCGGCGTCTTTGGATGTACCCTTCGGCCACCACCACCGCCACCGCCACCTTATTAG 1122 49.55 MKTSTSLLPSSLLLVSIFILLFQPSHQQTPSPFLPNPRLLKAYIALQAWKHAITADPANFTANWYGPNVCNYTGVFCAPALDDSDIRTVAGIDLNHANISGTLPDDLGLLTDLALFHINSNRFCGTIPDSFRCLTLLFELDISNNDFSGEFPSVILSLPALKFLDVRFNKFSGDLPSSLFDLKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSISNMNTTLNEIIITSSGLIGCLPPEIGSLRNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPPVCLKLQASDDQKNCLPDRPFQRSPEECKAFYSYPVDCGVFGCTLRPPPPPPPPY 373
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 3740501 3741640 + MELO3C006506.2.1 Cme06g00581 329730
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00581 373 Pfam Leucine rich repeat 231 290 IPR001611 GO:0005515
Cme06g00581 373 Pfam Leucine rich repeat N-terminal domain 45 77 IPR013210 -
Cme06g00581 373 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 21 369 - -
Cme06g00581 373 Gene3D Ribonuclease Inhibitor 42 208 IPR032675 -
Cme06g00581 373 SUPERFAMILY L domain-like 43 323 - -
Cme06g00581 373 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 21 369 - -
Cme06g00581 373 Gene3D Ribonuclease Inhibitor 209 344 IPR032675 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00299 Cme-Chr1:2243543 Cme06g00581 Cme-Chr6:3740501 2.37E-137 dispersed
Cme02g01330 Cme-Chr2:19221068 Cme06g00581 Cme-Chr6:3740501 1.06E-152 dispersed
Cme05g02020 Cme-Chr5:28631157 Cme06g00581 Cme-Chr6:3740501 7.89E-92 dispersed
Cme06g00581 Cme-Chr6:3740501 Cme11g02178 Cme-Chr11:29123538 6.62E-129 dispersed
Cme07g00332 Cme-Chr7:2123243 Cme06g00581 Cme-Chr6:3740501 6.33E-78 dispersed
Cme06g00581 Cme-Chr6:3740501 Cme05g01968 Cme-Chr5:28235872 8.51E-159 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00581 - - cmo:103483684 721.079