Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00583 ATGGCAACCTTAATGCATTCTGAATCTCGGCGCTTATATTCTTGGTGGTGGGATAGCCATATCAGCCCCAAAAATTCAAAATGGCTACAGGAGAATCTAACAGACATGGATGCCAAAGTAAAAGCAATGATCAAACTCATTGAAGAAGATGCAGACTCCTTTGCCAGAAGAGCAGAAATGTACTATAAGAAACGTCCAGAGCTTATGAAATTAGTTGAGGAATTCTACAGAGCCTACCGTGCTTTAGCTGAAAGATATGACCATGCAACTGTGGAACTTCGCCATGCACATAAAGCCATGGCTCAAGCCTTTGACAACCAAATGCCTCCTTTTATGTTTTCCGACGAGTCTTCTGTTTCTGAAGCTGAATCCCACTCACCAGAAATCCACCTCCCAAATCATGCACTGCATGTCAAAGATGACTTGCACAAGGAATCGGGGAGTTCTTCGTCAACAAACCAACATCCATTGAGAATGAAAGGAGATGGTGCTGGGGAATCTAATTCTCGTGTAAGTAAAGGGGGTCTGAAGCAGCTCAATGAGATGTTTGCATCAAGAAAAAACGTGCCAGAAACTTTAGAGGTTAGTGAGGGAAGCATTGGAACGCAATCAGTTTTTCATGATGGCGATTTTGATCCTTCTCAATTATCAAGACAGATTAATGATCACGACTCTCAGGTCCTGTGTGAGTCAGTCTCAGAAAGTGATGAAAAATTGGATGCTGAACTTCAAAATTTAAGAAAAAGACTGAATCTGATGGAAGCTGAAAAGGAAGCTTTCTTTCTCAAATACCAGAATTCTTTGGAGAAATTATCCAGCCTGGAGAAAGAACTTAGTTCTGCTCAAAAAGATGCTGGTGGACTTGACGAAAGAGCAAGCAAAGCTGAAATTGAAATAAAAATATTAAAGGAAGCCCTTCTAGATTTGAAAGCCGAGAAGAATTCTGGCCTTCTACAGTATAATCAATGTTTGCAAAAGATATCTAGCTTAGAAAAGCTATTAGCTGTAGCCCAACAAGATGCTGAAGGACACAATGAGAGAGCTGCTAAGGCAGAAATTGAAGCTCAGAACCTTGAGCAACAACTTTCCAGATTAGCATCTGAAAAGGAGGTCTGTCTTCTTCAGTATGAGCAATGCCTAAAGAAGATATCTGCTTTAGAGAACAAAATATCTCTTTCTGAAGATTATGCAAGGATGCTTGATGAACAAATGAGTAGTTCAGAAGCTGAAGTGAAAGCGCTGAAGAGATCTCTTGATGAACTCAACGAAGAGAAGGAAATCGCATCTCGCAATTATGAGCAGTGCTTGGAGAAAATCGCCAAGATGGAAACTGAAATATCTTATGCTCAAGATGATGCCAAACGTCTGAAAGGTGAACTTGTGATGGCCAATGCAAAACTGGAGACAACAGAAGAATGGTGTGCTCATTTGGAGAAGTCGAACCATTCACTTCAGTTCGAGGCAGACAAACTTGTACAGAAGATTGCTATGAAGGATCAAGAGCTTGCTGAAAAGCAAGATGAGTTGAAAAAATTGCATAATTTAATGAATGAGGAGCAGTCACGATTTGTACAAGTCGAGAACACTCTTCACACTTTGCAGAAGTTACATTGTCAATCTCAGGAGGAGCAGAGAGCTCTGACCTTGGAGCTTAAAAATGGTCTCATGATGCTGAAGGATTTGGATATATGCAAACATGGGATGGAGGAAGAGCTTCAACGAGTTAAGGATGAAAACAAAATGTTGAATGAATTGCATTTTTCTTCTAATACTTCAATGAAGAATTTAGAGGATCAATTATCTGGCTTGAAGGATATAAAAGAGAAGCTTGAAGGGGTGGTCTCCCAAAAAGAAGAGCAAAGCAACTCTCTTGAGAAAGAGATCTATCATTTGAGAGAAGAAATTAAAGGCTTGAGTGGAAGATACCAGGGGATAATGAGACAATTGGAGGCAGTAGGATTGGATCCGCACTCCCTTGAATCTTCTGTGAAAGAATTTCAAGAGGAAAATGGTAAGCTGAGGGAGGCCTGTGAAAGGGACAGGAACAAGATCGAAGCACTTTATGAAAAACTCAGTTATATGGATGAACTTGCAAAGGAGAATTCGAATCTCAAGGTATCTCTGGCTGAATTGAATGCTGAACTGGAGAAGATAAGGGAAAAAGTCAAGGAATCCCAGGAGCTTTCCCAATTTACCCAGGGAGAAAAAACTGCTCTTGTTGCAGAGAAATCTTCCTTGCTTTCACAACTGCAGAATGTAACTGAGAATATGATGAAACTTTTAGAGAAGAACACATCGCTGGAAGAGTCCCTATCTAGTGCAAATAAAGAGCTTGAAGGATTAAGAGCAAAAACAAAGGGCTTAGAAGAATTTTGCCAGTTGCTGAAGGATGAGAGATCCAATCTTTTGAATGAAAGAGGTGCACTGGTGGCTCAGCTTGAAAACATTGAACTGAGACTTGGAAACCTGGAAAAGAGGTTTACGAATCTAGAAGAAAAATATGCTGATCTGGAAAATGACAAAGATTCTGCCTTACATCAAGTAGAAGAATTGAGATTTTCCCTTCTCGTGGAAGAACAAGAGCATACAAGTTACAAGCAGTCAACTGAGGCCAGACTTGCTGGTTTGGAGAACAATGTCCATAAACTACGAGAAGAAAGTAGAGTGAGCAAGGAAGAAATTGAAGAGCTACTAGACAAGGCTGTGAATGCCCAAGTTGAAATCTACATATTGCAGAAGTTTGTTGAGGATTTGGAAGAGAAAAATCTTTCTTTGCTTATCGAATGTGAACAATATGAAGAGGCATCCAAGTTATCAGATAAACTTATTGCTGAATTGGAAGGTGAAAATCTTGAGCAACAAGTTGAAGTAGAATTTATGTACAATGAAATTGATAAATTAAGAGCAGGAATCCGTAAGGTATTAATGGCACTTCAAATGGATCAAGATTGTGGGCAGGGAAATGTGAAAGAAGAGAGAATTCTGATAGTGGATATTTTGACCAGAATTGAGGATTTGAAAGCTTCCATGTTCAAAAACAAAGACAAGAAGCAGCAACTGTTAGTTCAGAACTCGGTTTTATTAACTCTTCTCAAGCAACTGAGTTTAGAGAGTGAAGAACTTCTGTCAGAGAAAGAGAACATTGTGCAGGAGTTAAAGATCATGAAGGGCCAACTGGCAATGCATGAAAATGACAAGCATGAGCTTCTGAAGACGAAAAACCAGTTGATGAGGCAAGTTAGCCAGTGGGAACAGCATGAGCTACTGCTGAAGGCCGAGATTGAAACTCTAAACGAGAAGCTAATAAATCTGCAAGGGGCCTGTCTTATGCTGGAAAAGGAAAATTTTAATATTGCTGAAGAAAAAAAAACGTTGCTGAAGAAATTTCTGGACCTTGAAGAGGACAAGAATATTATTCAACAAGAGCAGCACAATTTAATCATCCAGGAAGTGATTGCTTTCAACATTCTATCATCAATTTTTGAAAGCTTCAAAACCGAGAAATTCTTGGAAATAGAAAAGCTTGTTAAAGATATATGTCATCTCCAAGTGGTTAATTCTGATTCAAGGGAAGAATTTGGAAAGTTGGCAGAGAAATTTCAGTTGAAGGAAGCGGAAAATTTGCATTTAAATGGATCTGTAGTGAAATTGTCCAAGGAGCTACATGAAGCAGAAGACTTGAACAATGAACTTAACTATCAAATTTTACTTGGAAATGATTTTCTGAGGCTAAAGGCCCTAGAGCTTTCTGAAACAGAAGCGGAGCTTAAAAATTCTCAAAATTTCAACATGAAGTTGTCTGGGACAGTTGAGGAGCTCAAGATGGAAGGCAAGGAATCGATGAAGATCAGACACAGCCTACAGAGTGAGAATTTTCAACTTTCTGAAAAGTGTTTAAGCCAGGAGAATGATATTCAATGCCTCTGCGAAGTAAATAAAAATTTAAAATCTGAAGTTGATTTGTTGAATGAGGAGGTTGGGAAATGCAAAAGTCGAGAGGAGTGTCTGAGTTTAGAACTGCAGGAAAAAAGAGATGAATTTGAGCTCTGGGAAGCTGAAGCCACAACATTTTATTTTGATCTTCAAATCTCATCGATACGGGAGGTTTTATACGAACATAAGGTTCATGAACTTGCACAGGCTTGTGAAAAGGCTGGGGATGAGAACACTGCAAAAACTATGGAGATTGAACAACTCAGAGAAAGAGTGAGTTTCCTAGAAACTGAAATCAGAGAAATGGAGTCACAGTTGTCTGCTTATAAGCCCGCCATAGCTTCTTTGAGGGAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAGACTAGGGATACCTGTAGGGGTTTTATAGGAGAAGAGGGCGAGGAAACCACAATTCATGTTGATCACAGGATCTGTAATGGCCACAAAGAGGAGATACTGGATTTACAGAAGATTGGGGCCATGATAAAAGCAGTTGAGAAGGCTGTGATCAAGGAAAAGGAAAAACTCAACAAAGAAGCTACTGACAAACATGTCAAAGACTTCAAATCAGAAGGTACCTCCTGTCAGAAAATGACGATGAAGGAAAAGAAAGATTTGGTAGATGGAATTACTAGTAATCTGAAGGCAAGAAAGAAGAAACCTGACAATGGAATATTAATGAAAGATATTCCATTGGATCATGTATCAGATAATTCTTTCCAGAGAAGAAGCAAAAGGGAAAGTAGTGAGACCAATGATCAAATGCTTAAGTTGTGGGAAACTGATGAGCAGGATCGTGACCAGAATTTGATTGATAGCTCGCCACCACAAAGCCCGCCTGATCCGCAAATCGAGTACCCACATTTGGAAATTGTAGAACACAAGAGTCCAGACTTTTCTTCAGAACTGAAAGCAGAGAAGGAGTTGAGCATTGATAGATTAGAATTATCGCCCAGCATTAGAGAACGAATTCGAAGAGGCCGAAAAGGAAAAATTTTGGAGAGGCTTGATTCAGATGTCGTTCAATTGACAGGTCTTCTAACAAGCATCCAAGATCTGAAAAAGAGAATTGAAGTGAACACCCTTGAAATGGCCAGAAACAACGAATATGACACGGTCGAAAAACATATAAAAGAAGTTGAGGAAGCCATTTATCAGCAAGTAAATATGAATGGCCAACTAAAGCAGAATTTGGAACGCAGTCCCTCATCTTTCGAGCGAAGACCATCAGTCGAGCTCGAAGCAACTGGAAACATCCCCCTAAGTAAACTAACAGAGCAGGCACAAAGAGGAACCGAGAAGATAGGAAAACTACAGTTTGAGGTACAGAACATTCAGCGTGTTGTGCTGAAACTCGAAGCCGAGAAGAAAAGAAAAGGGAAGAACAGATTCTCCAAGAGTAAACCTGGTGTTATCCTGAGAGACTTCATCAACAGAAGTGGAAAACGAAGTGAAAGAAGAAAGAAGCCGTGCTCTTGTGGATGCACAAGACCTTCTACTCATGGAGACTGA 5475 39.74 MATLMHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATVELRHAHKAMAQAFDNQMPPFMFSDESSVSEAESHSPEIHLPNHALHVKDDLHKESGSSSSTNQHPLRMKGDGAGESNSRVSKGGLKQLNEMFASRKNVPETLEVSEGSIGTQSVFHDGDFDPSQLSRQINDHDSQVLCESVSESDEKLDAELQNLRKRLNLMEAEKEAFFLKYQNSLEKLSSLEKELSSAQKDAGGLDERASKAEIEIKILKEALLDLKAEKNSGLLQYNQCLQKISSLEKLLAVAQQDAEGHNERAAKAEIEAQNLEQQLSRLASEKEVCLLQYEQCLKKISALENKISLSEDYARMLDEQMSSSEAEVKALKRSLDELNEEKEIASRNYEQCLEKIAKMETEISYAQDDAKRLKGELVMANAKLETTEEWCAHLEKSNHSLQFEADKLVQKIAMKDQELAEKQDELKKLHNLMNEEQSRFVQVENTLHTLQKLHCQSQEEQRALTLELKNGLMMLKDLDICKHGMEEELQRVKDENKMLNELHFSSNTSMKNLEDQLSGLKDIKEKLEGVVSQKEEQSNSLEKEIYHLREEIKGLSGRYQGIMRQLEAVGLDPHSLESSVKEFQEENGKLREACERDRNKIEALYEKLSYMDELAKENSNLKVSLAELNAELEKIREKVKESQELSQFTQGEKTALVAEKSSLLSQLQNVTENMMKLLEKNTSLEESLSSANKELEGLRAKTKGLEEFCQLLKDERSNLLNERGALVAQLENIELRLGNLEKRFTNLEEKYADLENDKDSALHQVEELRFSLLVEEQEHTSYKQSTEARLAGLENNVHKLREESRVSKEEIEELLDKAVNAQVEIYILQKFVEDLEEKNLSLLIECEQYEEASKLSDKLIAELEGENLEQQVEVEFMYNEIDKLRAGIRKVLMALQMDQDCGQGNVKEERILIVDILTRIEDLKASMFKNKDKKQQLLVQNSVLLTLLKQLSLESEELLSEKENIVQELKIMKGQLAMHENDKHELLKTKNQLMRQVSQWEQHELLLKAEIETLNEKLINLQGACLMLEKENFNIAEEKKTLLKKFLDLEEDKNIIQQEQHNLIIQEVIAFNILSSIFESFKTEKFLEIEKLVKDICHLQVVNSDSREEFGKLAEKFQLKEAENLHLNGSVVKLSKELHEAEDLNNELNYQILLGNDFLRLKALELSETEAELKNSQNFNMKLSGTVEELKMEGKESMKIRHSLQSENFQLSEKCLSQENDIQCLCEVNKNLKSEVDLLNEEVGKCKSREECLSLELQEKRDEFELWEAEATTFYFDLQISSIREVLYEHKVHELAQACEKAGDENTAKTMEIEQLRERVSFLETEIREMESQLSAYKPAIASLREDVESLKHIVLPQTRDTCRGFIGEEGEETTIHVDHRICNGHKEEILDLQKIGAMIKAVEKAVIKEKEKLNKEATDKHVKDFKSEGTSCQKMTMKEKKDLVDGITSNLKARKKKPDNGILMKDIPLDHVSDNSFQRRSKRESSETNDQMLKLWETDEQDRDQNLIDSSPPQSPPDPQIEYPHLEIVEHKSPDFSSELKAEKELSIDRLELSPSIRERIRRGRKGKILERLDSDVVQLTGLLTSIQDLKKRIEVNTLEMARNNEYDTVEKHIKEVEEAIYQQVNMNGQLKQNLERSPSSFERRPSVELEATGNIPLSKLTEQAQRGTEKIGKLQFEVQNIQRVVLKLEAEKKRKGKNRFSKSKPGVILRDFINRSGKRSERRKKPCSCGCTRPSTHGD 1824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3746721 3755226 - MELO3C006509.2.1 Cme06g00583 329732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00583 1824 SUPERFAMILY Tropomyosin 230 434 - -
Cme06g00583 1824 Coils Coil 1382 1416 - -
Cme06g00583 1824 MobiDBLite consensus disorder prediction 1799 1813 - -
Cme06g00583 1824 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Cme06g00583 1824 Coils Coil 1094 1114 - -
Cme06g00583 1824 Coils Coil 915 935 - -
Cme06g00583 1824 Coils Coil 229 312 - -
Cme06g00583 1824 MobiDBLite consensus disorder prediction 1798 1824 - -
Cme06g00583 1824 Coils Coil 397 459 - -
Cme06g00583 1824 PANTHER PROTEIN NETWORKED 4A 1 1824 - -
Cme06g00583 1824 Coils Coil 663 683 - -
Cme06g00583 1824 Coils Coil 1214 1234 - -
Cme06g00583 1824 Coils Coil 593 634 - -
Cme06g00583 1824 Coils Coil 558 585 - -
Cme06g00583 1824 Coils Coil 743 784 - -
Cme06g00583 1824 Coils Coil 806 854 - -
Cme06g00583 1824 Coils Coil 320 375 - -
Cme06g00583 1824 Coils Coil 943 963 - -
Cme06g00583 1824 Coils Coil 694 728 - -
Cme06g00583 1824 Coils Coil 1031 1086 - -
Cme06g00583 1824 Coils Coil 866 900 - -
Cme06g00583 1824 Coils Coil 488 529 - -
Cme06g00583 1824 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Cme06g00583 1824 Coils Coil 1305 1332 - -
Cme06g00583 1824 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 1824 - -
Cme06g00583 1824 MobiDBLite consensus disorder prediction 142 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00583 - - - csv:101218746 3264.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00469 Cme-Chr5:4275744 Cme06g00583 Cme-Chr6:3746721 6.57E-47 dispersed
Cme06g00583 Cme-Chr6:3746721 Cme12g00006 Cme-Chr12:121328 3.82E-37 dispersed
Cme06g02226 Cme-Chr6:28877074 Cme06g00583 Cme-Chr6:3746721 2.16E-37 transposed
Cme01g02044 Cme-Chr1:29199315 Cme06g00583 Cme-Chr6:3746721 4.36E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00583 Cme_Chr06 FPKM 0.0 0.0 2.815361 3.214715 0.0 0.0 0.0 2.452711 2.086262 2.555921