Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00588 ATGGATTCGAAAGGAAATGTTATGGGGGGTGCTGCGGTCCCAAAGGAGACACAGAACCAGGATAGAACTCCGAACTCAAAGGTGGCTGGTACGGGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGACAAGATTGATTTGAAAACTCTAGATATACAGCTAGAAAAGCACTTGAGCCGTGTTTGGTCAAAGAGCATTGAGAATCAAATGCCTAAGGAGCCGTGGGAGATTGATTTGTCTAAACTTGATATCATAAAACAAATTGCTCAAGGGACTTACGGAACAGTATACAGGGGTAAATATGACGACCAAGAGGTTGCAGTTAAGATATTGGACTGGGGAGAGGAGGGTCTAGCCACGATGGCTGAAACTGCTGCTCTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAATTTATCGGAGCTTCAATGGGAGCTACAAATCTTAAAATTTCAATGGATGGTCAAAATTCGTTTCCATCTAGGGCCTGTTGTGTTGTTGTTGAGTATGTTCCTAGCGGAACATTAAAAGATCATTTGATTAGATACTGGACGAAGAAACTTTGCATTAAGGCTGTAGTTAAATTAGCTTTGGATCTATCTAGAGGGCTTAGCTATTTACACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGATGGATATTCACCATAATGTCAAAATTGCTGATTTTGGGGTTGCCCGCGTTGAAGCTCAAAATCCAAGAGACATGACTGGGGCAACTGGTACCCTAGGATACATGGCCCCGGAGGTTCTTCAAGGGAAGCCGTACAATAGAAGTTGTGATGTCTATAGCTTTGGCATCTGCTTGTGGGAAATTTACTGCTGTGATATGCCATACGCCGATCTTAGTTTCGCTGACGTGTCATCTGCTGTTGTGAGACATAATCTGCGGCCTAGTATCCCAAGATGCTGTCCAAGCTCTCTAGCAAATGTGATGAAGAAATGCTGGGATGCCAACCCAGAGAAACGCCCTGAAATGCATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAAGCAAAGGAGGAGGGATGATTAATCCCGATGACATTAAATGCTTCTGTTTCAGGCCTTTCGGCAAGTTCCGAGGTCTGTGA 1164 43.56 MDSKGNVMGGAAVPKETQNQDRTPNSKVAGTGSISSKDMIFRADKIDLKTLDIQLEKHLSRVWSKSIENQMPKEPWEIDLSKLDIIKQIAQGTYGTVYRGKYDDQEVAVKILDWGEEGLATMAETAALRASFRQEVAVWHKLDHPNVTKFIGASMGATNLKISMDGQNSFPSRACCVVVEYVPSGTLKDHLIRYWTKKLCIKAVVKLALDLSRGLSYLHSKKIVHRDVKTENMLMDIHHNVKIADFGVARVEAQNPRDMTGATGTLGYMAPEVLQGKPYNRSCDVYSFGICLWEIYCCDMPYADLSFADVSSAVVRHNLRPSIPRCCPSSLANVMKKCWDANPEKRPEMHEVVKMLEAIDTSKGGGMINPDDIKCFCFRPFGKFRGL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3781618 3784483 + MELO3C006511.2.1 Cme06g00588 329737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00588 387 SMART serkin_6 83 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00588 387 SUPERFAMILY Protein kinase-like (PK-like) 62 356 IPR011009 -
Cme06g00588 387 Gene3D Phosphorylase Kinase; domain 1 71 165 - -
Cme06g00588 387 Gene3D Transferase(Phosphotransferase) domain 1 182 368 - -
Cme06g00588 387 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 373 - -
Cme06g00588 387 ProSiteProfiles Protein kinase domain profile. 83 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g00588 387 MobiDBLite consensus disorder prediction 16 31 - -
Cme06g00588 387 PRINTS Tyrosine kinase catalytic domain signature 179 192 IPR001245 GO:0004672|GO:0006468
Cme06g00588 387 PRINTS Tyrosine kinase catalytic domain signature 217 235 IPR001245 GO:0004672|GO:0006468
Cme06g00588 387 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Cme06g00588 387 PRINTS Tyrosine kinase catalytic domain signature 327 349 IPR001245 GO:0004672|GO:0006468
Cme06g00588 387 CDD STKc_MAP3K-like 89 356 - -
Cme06g00588 387 Pfam Protein tyrosine and serine/threonine kinase 84 356 IPR001245 GO:0004672|GO:0006468
Cme06g00588 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Cme06g00588 387 MobiDBLite consensus disorder prediction 1 31 - -
Cme06g00588 387 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 1 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01961 Cme-Chr2:25864064 Cme06g00588 Cme-Chr6:3781618 1.94E-173 dispersed
Cme04g01893 Cme-Chr4:26601405 Cme06g00588 Cme-Chr6:3781618 5.53E-177 dispersed
Cme06g00588 Cme-Chr6:3781618 Cme05g01215 Cme-Chr5:19656771 3.53E-72 dispersed
Cme01g02042 Cme-Chr1:29154890 Cme06g00588 Cme-Chr6:3781618 1.00E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64940 PF07714 PK_Tyr_Ser-Thr 4.10E-61 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00588 - - csv:101218975 767.689