Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00603 ATGGGTGAAATTTTACATGAGCTCGAATATGTTCTCAGGTCCAAACCGAACGGTTTGACGATCGAGGAAGCGATTTTGCTCCAAACATGTAGGTCTAAGGCTGTTCGAGATTTTACATTTGGTGGTATCCTTGGAGGTGGCCTGACATGGGCAGGAACATGGAGGCTGAATAAATTTACTCGGCTAAATCTTTCCGGAGGAGCTGCTGCGCTTTGTGGATTTTGGAGATTTAGCAGGTCCCTAAACTCATGTGTCGATTATATTCTTTCACTGGATGGAAGTAGGATGCAAAAGGAATTGGCAAATATTGTTGTGACGAGATATCACAATGATCCTCGTGCAATGCAGTACATATCCAAGCATTTTTTTTATGAGGAAGTGTTTGACGATTCAACCTCGGACCGGCCAAAAATAAGGTGGCGTTATCGAAATTTCTTTAGTGATGATGTTGCTCATTCTCAGAGGACGCATGGTAATGACAACAACGTGCATGAAAACTCCCACCGTGATTCCAGTGCCCACCAGCGCGATTCCTATGGTGACTCCGATGACAAAGGAAATGCTCATGAGTTCAAGCCAGTCCTCACTAAGACTGGCACCGATTCTGCGACGGCAGACCCTCTAGATTGTATTTTTGGTACATTGGCCAGAGAAGAAGAAATTCAACACTCGACTCCCTCTGCTCCATCTCCGAAGCCTCACTCTCGTAGCAGAAGATACAATCGTCGGCATCGAAAAGATAACCAGACAAAACCAACAAACTTTGAATATGTGTAA 777 44.53 MGEILHELEYVLRSKPNGLTIEEAILLQTCRSKAVRDFTFGGILGGGLTWAGTWRLNKFTRLNLSGGAAALCGFWRFSRSLNSCVDYILSLDGSRMQKELANIVVTRYHNDPRAMQYISKHFFYEEVFDDSTSDRPKIRWRYRNFFSDDVAHSQRTHGNDNNVHENSHRDSSAHQRDSYGDSDDKGNAHEFKPVLTKTGTDSATADPLDCIFGTLAREEEIQHSTPSAPSPKPHSRSRRYNRRHRKDNQTKPTNFEYV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3867302 3872049 + MELO3C006526.2.1 Cme06g00603 329752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00603 258 MobiDBLite consensus disorder prediction 153 191 - -
Cme06g00603 258 MobiDBLite consensus disorder prediction 220 234 - -
Cme06g00603 258 MobiDBLite consensus disorder prediction 215 258 - -
Cme06g00603 258 PANTHER EXPRESSED PROTEIN 1 250 - -
Cme06g00603 258 MobiDBLite consensus disorder prediction 153 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00603 - - - cmo:103483703 520.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g517 . . . . . Bpe14g01192 . . . . . Cma14g01713 . Car14g01548 Sed12g0935 . Cpe03g01440 Bhi01g00800 Tan10g0834 Cmetu06g1819 . . . . . . . . . . . . . Cone7ag0260 Cone4ag0249 Lsi05g01610 . . Cme06g00603 . . . Bda13g00116 . . Bma02g00837 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01323 Chy06g00574 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007217 1 2 0 2 1 1 1 1 1 1 1 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 4 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00603 Cme_Chr06 FPKM 29.439217 34.127079 47.22113 48.489342 34.855782 24.601093 41.257465 25.075911 19.062826 29.600088