Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00608 ATGCCGTTTCTCTCGAAAAACTCGCTCGCTTCAGTGGTCGAATTGGCCGTATCGGTTCGTTCTTCTCTTCTTGGCCGAGCCGCCCACGCCCAAATTCTCAAAACCCTAAAAACCCCTTTTCCAGCTTTCCTCTACAACCACCTCGTGAACATGTACGCTAAACTTGACCATCTTAACTCGGCCAAACTCATCCTTGAACTTGCCCCTTGCCGCTCCGTTGTTACTTGGACTGCCCTCATTGCCGGTTCAGTCCAAAACGGCTGTTTTGTTTCCGCTCTGCTTCACTTCTCCGACATGCTAAGTGACTGTGTTCGACCCAATGACTTCACTTTCCCTTGCGTTCTCAAAGCCTCCACTGGCCTTCGCATGGATATGACAGGCAAACAGCTACATGCACTTGCGCTACTTCGGGTCGGTGAGAAGCCAGATTCCATAACATTTTGTGCTTTTTTGAATGCGTGTTCAGACAAACTAGGCTTGGGGCCTGGGTGTCAGCTTCATGGGTTCGTTATTCGAAGTGGGTATGGACAGAATGTCTCTGTTTCAAATGGGTTGATTGATTTTTATGGGAAATGTGGGGAGGTTGAATGTTCTGAGATGGTTTTTGATAGAATGGGAGAGCGGAACAGCGTATCTTGGTCCTCTTTGATAGCTGCTTACGTTCAAAACAACGAGGAAGAGAAGGCTTCCTGCTTATTCTTGCGAGCAAGGAAAGAAGATATCGAACCAACTGATTTTATGGTATCAAGTGTGCTTTGTGCCTGCGCTGGTCTTTCAGAAATCGAGTTTGGAAGGTCAGTTCAAGCACTAGCCGTCAAGGCTTGTGTAGAGCAGAACATCTTTGTTGCAAGTGCACTGGTTGACATGTATGGAAAATGTGGCAGTATTGATAACGCTGTGCAAGCCTTCAACGCGATGCCAGAGAGGAACTTGGTGTCTTGGAATGCATTGTTGGGCGGATATGCGCACCAAGGACATGCAAACAAGGCTGTGGCATTGCTCGAGGAGATGACATCGGCGGCAGGCATTGTGCCAAGCTATGTTAGTTTGATCTGTGCACTATCAGCTTGCAGTAGAGCAGGAGATTTGAAGACGGGGATGAAAATTTTTGAGTCCATGAAAGAAAGGTACGGTGTGGAACCAGGGCCAGAGCATTATGCTTGCTTGGTAGATTTGCTTGGACGTGCTGGAATGGTGGAATGTGCTTATGATTTTATAAAGAGGATGCCATTTCCTCCTACAATCTCAATCTGGGGTGCTCTGTTGGGGGCTTGCCGAATGCATGGGAAGCCAGAGTTGGGGAAGTTGGCCGCTGAGAAGCTGTTTGAACTCGATCCAAAAGACTCCGGAAATCACGTTGTTCTGTCTAATATGTTTGCTGCAACCGGAAGGTGGGAAGAAGCGACTGTCGTACGAAATGAGATGAAAGAGGTAGGGATCAAAAAAGGAGCTGGGTTCAGTTGGATAACAGTAGACAGTAGAATTCATATATTTCAAGCGAAAGACAAGAGCCATGAGAAGGACCCTGAAATTCAGAACATGCTGGGAAAGCTGAGAAAGGAGATGCAGGATGCTGCTGGTTGCATTGCAGACCCCAATTATGCTCTTTTCGAAGTGTCGAATTAA 1626 47.23 MPFLSKNSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDMTGKQLHALALLRVGEKPDSITFCAFLNACSDKLGLGPGCQLHGFVIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAVQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEATVVRNEMKEVGIKKGAGFSWITVDSRIHIFQAKDKSHEKDPEIQNMLGKLRKEMQDAAGCIADPNYALFEVSN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3885818 3888025 + MELO3C006529.2.1 Cme06g00608 329757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00608 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Cme06g00608 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Cme06g00608 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 345 IPR002885 -
Cme06g00608 541 TIGRFAM PPR: pentatricopeptide repeat domain 353 381 IPR002885 -
Cme06g00608 541 TIGRFAM PPR: pentatricopeptide repeat domain 211 244 IPR002885 -
Cme06g00608 541 TIGRFAM PPR: pentatricopeptide repeat domain 312 346 IPR002885 -
Cme06g00608 541 Pfam PPR repeat 354 376 IPR002885 -
Cme06g00608 541 Pfam PPR repeat 211 240 IPR002885 -
Cme06g00608 541 Pfam PPR repeat 312 338 IPR002885 -
Cme06g00608 541 Pfam PPR repeat 183 209 IPR002885 -
Cme06g00608 541 Pfam PPR repeat 386 409 IPR002885 -
Cme06g00608 541 Pfam PPR repeat 74 102 IPR002885 -
Cme06g00608 541 Pfam PPR repeat 284 310 IPR002885 -
Cme06g00608 541 Gene3D Tetratricopeptide repeat domain 339 526 IPR011990 GO:0005515
Cme06g00608 541 Gene3D Tetratricopeptide repeat domain 128 272 IPR011990 GO:0005515
Cme06g00608 541 PANTHER - 139 538 - -
Cme06g00608 541 Gene3D Tetratricopeptide repeat domain 4 127 IPR011990 GO:0005515
Cme06g00608 541 PANTHER - 7 140 - -
Cme06g00608 541 SUPERFAMILY TPR-like 421 535 IPR011990 GO:0005515
Cme06g00608 541 PANTHER OS01G0913400 PROTEIN-RELATED 139 538 - -
Cme06g00608 541 PANTHER OS01G0913400 PROTEIN-RELATED 7 140 - -
Cme06g00608 541 Pfam E motif 430 489 IPR046848 -
Cme06g00608 541 SUPERFAMILY TPR-like 222 449 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00608 - - - csv:101221353 828.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00608 Cme-Chr6:3885818 Cme10g00328 Cme-Chr10:2173116 1.15E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g511 . . . . . Bpe14g01189 . . . . . Cma14g01709 . Car14g01544 . . . Bhi01g00809 . . . . . Lcy11g1547 . . . . . . . . Cone10ag0051 . . . . . Cme06g00608 Blo02g00537 . . Bda13g00119 . . Bma02g00845 . . . Cmo14g01753 . . . . . . . . . . . . . . . . . . . . . Csa03g01327 Chy06g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010596 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00608 Cme_Chr06 FPKM 7.022414 6.471611 3.84032 4.117151 2.379449 1.498378 2.614119 1.538016 2.347622 2.281671