Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00612 ATGCTTGAACTCAGAACCTTATCTCTTCATCAACGCCCTCGAATGGTCACAACCTCACAAATTACCTCCTTTTCAAATTCATCCCTAAGCAGAGAAAAGAAAACAATGGCAACTCTTCATTTTGTTCCTTCCGCTTTCTCCCTACCAAAACAAAAGCAACCCATCAAGCTTTCCTCGGTCAAACCCACTACTCACATAAGCTGCTCACGACGGCGCTTGGTGGTCCGGTCGTACAAAGTAGTGATTGAGCACGAGGGGCAGACCACCGAGCTTGAGGTCGATCCCGACGAGAGCATATTGAGCAGTGCATTGGACAATGGCTTAGAAATTCCTCACGATTGCAAGCTTGGAGTTTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGTATGTTGAGCGATGACGTCGTGGAACAAGGCTATTCGCTTCTGTGCGTGGCTTATCCTCGCTCAGATTGCCACATTAAAACCATCCCTGAGGAGGAATTGCTGGCACTTCAATTAGCGACGGCTAATGACTAA 540 48.7 MLELRTLSLHQRPRMVTTSQITSFSNSSLSREKKTMATLHFVPSAFSLPKQKQPIKLSSVKPTTHISCSRRRLVVRSYKVVIEHEGQTTELEVDPDESILSSALDNGLEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3900194 3900934 + MELO3C006533.2.1 Cme06g00612 329761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00612 179 Gene3D - 75 177 IPR012675 -
Cme06g00612 179 PANTHER FERREDOXIN C 1, CHLOROPLASTIC 36 174 - -
Cme06g00612 179 Pfam 2Fe-2S iron-sulfur cluster binding domain 83 155 IPR001041 GO:0051536
Cme06g00612 179 CDD fer2 80 162 IPR001041 GO:0051536
Cme06g00612 179 PANTHER FERREDOXIN 36 174 - -
Cme06g00612 179 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 78 167 IPR001041 GO:0051536
Cme06g00612 179 SUPERFAMILY 2Fe-2S ferredoxin-like 76 173 IPR036010 GO:0051536
Cme06g00612 179 TIGRFAM fdx_plant: ferredoxin [2Fe-2S] 77 169 IPR010241 GO:0009055|GO:0022900|GO:0051537
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00612 K02639 petF; ferredoxin - csv:101206257 279.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00612 Cme-Chr6:3900194 Cme12g00640 Cme-Chr12:11589958 5.60E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g504 . . . . . . . . . . . Cma14g01705 . Car14g01540 . . Cpe03g01433 . . . . . . . . . . . . . . . . Cone7ag0252 . Lsi05g01602 . . Cme06g00612 . Blo07g00219 Bda11g00577 . . Bpe13g00606 . Bma06g01556 . . Cmo14g01748 . . . . . . . . . . . . . Cla05g00546 Cam05g0596 Cec05g0606 Cco05g0603 Clacu05g0593 Cmu05g0563 Cre05g0632 . Csa03g01332 Chy06g00583 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011622 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00612 Cme_Chr06 FPKM 5.027454 5.254218 6.063731 4.646704 10.337446 10.344666 10.926899 4.543439 6.580155 6.274025