Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00615 ATGGCTTCTATAAATTACTCTTCGCTTTCTCCTTCTTTCTTCACCGACTTATCTCGTATCTTCTTAAGAGAAATGATGTTTGGAATTGCCCGGAAGATTATGGCTGAACCAATATACACAGTAGCTTCTGATAGTGAAACTACTGGGGAAGATAGAACAACATCAACTTTTCCAGAAATTGCAGTTGGAATTGATATTGGCACTTCACAGTGTAGTATTGCAGTCTGGAATGGATCTCTGGTAGAGCTTCTTAAGAACACAAGAGATCAGAAAATTATGAGATCATATGTCACCTTCAAGGATGACACTCCTTCTGGGGGAGTTAGCAATGAGCTAAGCCATGAGTATGACATGCTCTCTGGTGCTGCAATTTTCAATATGAAACGCTTGATTGGAAGAGTTGACACTGATCCAGTTGTTCATGCATGCAAGAGCCTTCCTTTTCTAGTGCAAACTTTGGACATTGGTGTTCGTCCATTTGTTGCAGCTTTGGTGAATAATGTATGGAGATCTACAACTCCTGAAGAAGTTTTGGCAATCTTCATGGTTGAACTGAAAATGATGGCTGAATATCAACTGAAACGACCAATTAGAAATGTTGTTTTGACAATTCCAGTTTCATTCAGCCGATTCCAGCTTACTCGTGTGGAACGAGCTTGTGCAATGGCTGGATTTCAAGTTAGATTAATGCCTGAACCAACAGCAGTAGCTTTATTATATGCTCAACAACAACAGCAGGCTGCGCATGACAGCATGGGCAGTGGAAGTGAAAAAATTGCTCTTATTTTCAACATGGGAGCTGGATATTGTGATGCTGCTGTGTCAGCCATAGGAGGAGGGGTGTCACAGATCAGAGCCCTGGCTGGCAGTCCTATAGGAGGCGAAGATCTACTTCAAAACACCATGAAGTATCTTTTGCCAAATTCGGAATCTATATTCTCACATCGTGGAATTGATGAGATCAGAAGGATGGGCTTGCTCCGAGTTGCAACTCAAGATGCTATCCACAAGCTCTCGTTCCAGTCTAGTGTTGAAATCAATGTCAGCTTGGGAAATGGGTCGAAGTTATGCAAGGTTCTAAGCCGAGAGGAGTTTGAGATGGTGAACAGCAAGGTGTTCGAGAAATGTGAGAACCTTGTTAAGCAATGTTTACATGATGCACGAGTCGGGATCGAAGATTTGAGTGATGTAGTAGTGGTTGGCGGATGTTCATACATACCAAAGATCAGAAAGCTTCTGATGGAAATAAGTAAAAAGAAGGCACTTTATGAAGGAATAGATCCTTTAGAAGCTGCAGTTTCTGGTGCAGCTTTAGAAGGTGCAATAGCATCAGGCATTGGCGATCCATTTGGCAGTCTAGATCTTCTTAGCATCCAAGCAACGCCTCTTGCCATTGGAATTCGAGCTGATGGAAACAGTTTCATTCCAATTATCCCCAAGAACACCACAATGCCAGCACGCAAGGAGTTAGTTTTCACAACAGTTCAAGACAATCAAAGTGAGGCCCTAATTGTTGTCTATGAAGGTGAAGAGACAAGAGCAGAGGAAAACCACCTGCTTGGCTATTTCAAAATCATTGGAATTCCACCAGCACCCAAAGGAGTCCCTGAAATCACTATTTGTATGGACATTGACTCTTCAAATATGCTCAGAGTTCTAGCTGGGGCAGCACTCCCAGGTGCTCAACACCCTGCAACTCCTTACATGGAAGTCAAGATGCCGACCGTGGATGATGGACATGGCTGGTGTGCAGAAGCTCTGCATGGAAAATATGGTGCGACCATGGAATTGGTTACATTGCGGAAGAAAAGCTAG 1815 43.09 MASINYSSLSPSFFTDLSRIFLREMMFGIARKIMAEPIYTVASDSETTGEDRTTSTFPEIAVGIDIGTSQCSIAVWNGSLVELLKNTRDQKIMRSYVTFKDDTPSGGVSNELSHEYDMLSGAAIFNMKRLIGRVDTDPVVHACKSLPFLVQTLDIGVRPFVAALVNNVWRSTTPEEVLAIFMVELKMMAEYQLKRPIRNVVLTIPVSFSRFQLTRVERACAMAGFQVRLMPEPTAVALLYAQQQQQAAHDSMGSGSEKIALIFNMGAGYCDAAVSAIGGGVSQIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGIDEIRRMGLLRVATQDAIHKLSFQSSVEINVSLGNGSKLCKVLSREEFEMVNSKVFEKCENLVKQCLHDARVGIEDLSDVVVVGGCSYIPKIRKLLMEISKKKALYEGIDPLEAAVSGAALEGAIASGIGDPFGSLDLLSIQATPLAIGIRADGNSFIPIIPKNTTMPARKELVFTTVQDNQSEALIVVYEGEETRAEENHLLGYFKIIGIPPAPKGVPEITICMDIDSSNMLRVLAGAALPGAQHPATPYMEVKMPTVDDGHGWCAEALHGKYGATMELVTLRKKS 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3937542 3940791 - MELO3C006536.2.1 Cme06g00615 329764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00615 604 SUPERFAMILY Actin-like ATPase domain 60 242 IPR043129 -
Cme06g00615 604 CDD HSP70_NBD 62 441 - -
Cme06g00615 604 ProSitePatterns Heat shock hsp70 proteins family signature 3. 397 411 IPR018181 -
Cme06g00615 604 Gene3D Actin; Chain A, domain 4 294 375 - -
Cme06g00615 604 PRINTS 70kDa heat shock protein signature 200 220 - -
Cme06g00615 604 PRINTS 70kDa heat shock protein signature 535 551 - -
Cme06g00615 604 PRINTS 70kDa heat shock protein signature 454 473 - -
Cme06g00615 604 PRINTS 70kDa heat shock protein signature 426 446 - -
Cme06g00615 604 PRINTS 70kDa heat shock protein signature 60 73 - -
Cme06g00615 604 PRINTS 70kDa heat shock protein signature 394 410 - -
Cme06g00615 604 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 456 555 IPR029047 -
Cme06g00615 604 Pfam Hsp70 protein 61 556 IPR013126 GO:0005524|GO:0140662
Cme06g00615 604 Gene3D - 245 423 - -
Cme06g00615 604 PANTHER HEAT SHOCK PROTEIN 70KDA 37 603 IPR013126 GO:0005524|GO:0140662
Cme06g00615 604 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 37 603 - -
Cme06g00615 604 SUPERFAMILY Actin-like ATPase domain 256 442 IPR043129 -
Cme06g00615 604 Gene3D - 125 180 - -
Cme06g00615 604 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 452 563 IPR029047 -
Cme06g00615 604 Gene3D - 62 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00615 K09489 HSPA4; heat shock 70kDa protein 4 - csv:101206971 1090.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00615 Cme-Chr6:3937542 Cme09g00508 Cme-Chr9:4915047 3.91E-90 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g487 . . . . . . . . . . . Cma14g01701 . Car14g01537 Sed12g0915 . Cpe03g01430 Bhi01g00820 Tan10g0851 Cmetu06g1845 . Hepe05g1544 . Lcy11g1539 . . . . . . . . . . . Lsi05g01597 Csa02g01145 . Cme06g00615 . Blo07g00214 Bda11g00572 . . Bpe13g00611 . Bma06g01551 . . Cmo14g01744 . . . . . . . . . . . . . Cla05g00551 Cam05g0599 Cec05g0610 Cco05g0607 Clacu05g0597 Cmu05g0567 Cre05g0635 . Csa03g01338 Chy06g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010241 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00615 Cme_Chr06 FPKM 51.719364 46.999981 109.351395 104.620804 74.123024 68.64119 75.43586 59.959869 62.594021 68.544693