Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g00617 CAAATCAAAATCATACTTTTCTTTACATTTTCACTTGCTTTCTTCTTCCTTAAATACCCCATCTTCCCTTCCTTCTTCCCCATCAAATACTTCTGTCCTTCTCTATTTCTTGTTCTTTCCTCTGAGTTTCTTCTCCCAGCATCAACAATGGCTGATGTTTCCTCTGCTAATTTGGTTAACAATGGCAATGAGCTTATTGAGAAGGGTCATGCCTTAAATGGGTATCGAAAAAGCTGTTGGTATGAAGAAGAAATTGAAGAGAATTTAAGATGGTCCTTTGCTCTTAATAGTATACTACATACCGGAGCTTCTCAGTATCAAGATATCGCTTTACTCGACACAAAGCCGTTCGGGAAGGCGTTGGTTATCGATGGAAAACTTCAGAGTGCAGAAACTGATGAATTCATTTACCATGAGTGCCTTGTTCACCCTGCACTTCTCCATCATCCCAATCCAAAGTCCATTTTTATCATGGGAGGAGGTGAAGGCTCCACAGCAAGAGAACTACTTAGACATAAGACTGTGGAGAAAGTCGTAATGTGCGACATTGATGAGGAAGTTGTTGATTTCTGCAAGTCATACCTGATAGTAAACAAAGAAGCTTTCTGTGATCCAAGACTTGAACTTATCATTAACGATGCCAGAGCGGAGCTTGAGAACCGAACTGAGCTATACGACGTAATCGTTGGTGATCTTGCAGACCCAATCGAGGGTGGTCCTTGTTATAAACTCTATACCAAATCTTTCTATGAATATACTGTGAAGCCTAGATTGAAGCAAGATGGCATATTTATCACTCAGGCTGGTCCAGCTGGAATTTTCAGCCATACTGAAGTGTTTTCTTGCATCTACAATACTCTAAAGCAAGTTTTTAAATATGTGGTGCCTTATTCTGCCCATATTCCTTCCTTTGCTGATACTTGGGGTTGGGTTATGGCCTCAGACACCCCTTTCAATCTGAATGCTGATGATTTGGACCAGAGAATCAAACAAAGAATCACAGGGGAAAACAAGTACTTTGATGGAAAAACATTCTCATCTGCCTCTACATTAAGCAAAGCGGTTCGAAAGTCACTCGACAACGAGACGCAAGTGTACACAGAAGAAACGGCGAGGTTCATATATGGATATGGAGCTGAAGCCTGCAAGCTCAACCAAGTTTGA 1164 41.07 QIKIILFFTFSLAFFFLKYPIFPSFFPIKYFCPSLFLVLSSEFLLPASTMADVSSANLVNNGNELIEKGHALNGYRKSCWYEEEIEENLRWSFALNSILHTGASQYQDIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHHPNPKSIFIMGGGEGSTARELLRHKTVEKVVMCDIDEEVVDFCKSYLIVNKEAFCDPRLELIINDARAELENRTELYDVIVGDLADPIEGGPCYKLYTKSFYEYTVKPRLKQDGIFITQAGPAGIFSHTEVFSCIYNTLKQVFKYVVPYSAHIPSFADTWGWVMASDTPFNLNADDLDQRIKQRITGENKYFDGKTFSSASTLSKAVRKSLDNETQVYTEETARFIYGYGAEACKLNQV 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3948143 3951179 + MELO3C006538.2.1 Cme06g00617 329766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g00617 387 CDD AdoMet_MTases 159 267 - -
Cme06g00617 387 Gene3D Spermidine synthase, tetramerisation domain 78 130 IPR037163 -
Cme06g00617 387 Pfam Spermine/spermidine synthase domain 134 313 - -
Cme06g00617 387 PANTHER SPERMINE SYNTHASE 50 380 - -
Cme06g00617 387 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 50 380 - -
Cme06g00617 387 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 78 360 IPR029063 -
Cme06g00617 387 Hamap Polyamine aminopropyltransferase [speE]. 79 360 IPR001045 GO:0003824
Cme06g00617 387 Pfam Spermidine synthase tetramerisation domain 80 131 IPR035246 -
Cme06g00617 387 Gene3D Vaccinia Virus protein VP39 131 382 IPR029063 -
Cme06g00617 387 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 78 315 IPR030374 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g00617 K18787 ACL5; thermospermine synthase [EC:2.5.1.79] - csv:101221818 692.189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01388 Cme-Chr3:23398077 Cme06g00617 Cme-Chr6:3948143 1.14E-158 dispersed
Cme05g02065 Cme-Chr5:28903108 Cme06g00617 Cme-Chr6:3948143 1.21E-141 dispersed
Cme06g00617 Cme-Chr6:3948143 Cme09g01974 Cme-Chr9:23631657 1.94E-28 dispersed
Cme06g00617 Cme-Chr6:3948143 Cme10g00511 Cme-Chr10:3310205 9.10E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g479 . . . . . Bpe14g01182 . . . . Cma06g01416 . Car06g01221 . Sed02g1246 Cpe08g00255 . Bhi01g00823 Tan10g0855 Cmetu06g2393 . Hepe05g1540 . Lcy11g1531 . . . . . . . . . . Cone4ag0236 Lsi05g01427 . . Cme06g00617 Blo02g00544 . . Bda13g00130 . . . . . Cmo06g01418 . . . . . . . . . . . . . . Cla05g00553 Cam05g0603 Cec05g0612 Cco05g0610 Clacu05g0599 Cmu05g0569 Cre05g0638 . Csa03g01341 Chy06g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002288 2 3 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 4 2 2 2 2 2 2 2 1 2 6 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g00617 Cme_Chr06 FPKM 43.429485 42.417107 40.385391 46.186317 41.309292 40.181114 44.597561 50.643612 51.745655 56.319584